Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
accC2 | aspC1 | aq_1470 | aq_1969 | Biotin carboxylase. | Aspartate aminotransferase; Catalyzes the reversible conversion of aspartate and 2- oxoglutarate to glutamate and oxaloacetate. Can also transaminate prephenate in the presence of aspartate. Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. | 0.802 |
accC2 | gltA | aq_1470 | aq_150 | Biotin carboxylase. | Citrate synthase. | 0.914 |
accC2 | gltB | aq_1470 | aq_1565 | Biotin carboxylase. | Glutamate synthase large subunit. | 0.800 |
accC2 | mdh1 | aq_1470 | aq_1782 | Biotin carboxylase. | Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. | 0.901 |
accC2 | mdh2 | aq_1470 | aq_1665 | Biotin carboxylase. | Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. | 0.901 |
accC2 | oadA | aq_1470 | aq_1614 | Biotin carboxylase. | Oxaloacetate decarboxylase alpha chain. | 0.999 |
aspC1 | accC2 | aq_1969 | aq_1470 | Aspartate aminotransferase; Catalyzes the reversible conversion of aspartate and 2- oxoglutarate to glutamate and oxaloacetate. Can also transaminate prephenate in the presence of aspartate. Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. | Biotin carboxylase. | 0.802 |
aspC1 | fumB | aq_1969 | aq_1780 | Aspartate aminotransferase; Catalyzes the reversible conversion of aspartate and 2- oxoglutarate to glutamate and oxaloacetate. Can also transaminate prephenate in the presence of aspartate. Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. | Fumarate hydratase (fumarase). | 0.800 |
aspC1 | fumX | aq_1969 | aq_1679 | Aspartate aminotransferase; Catalyzes the reversible conversion of aspartate and 2- oxoglutarate to glutamate and oxaloacetate. Can also transaminate prephenate in the presence of aspartate. Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. | C-terminal fumarate hydratase, class I. | 0.800 |
aspC1 | gltB | aq_1969 | aq_1565 | Aspartate aminotransferase; Catalyzes the reversible conversion of aspartate and 2- oxoglutarate to glutamate and oxaloacetate. Can also transaminate prephenate in the presence of aspartate. Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. | Glutamate synthase large subunit. | 0.949 |
aspC1 | icd | aq_1969 | aq_1512 | Aspartate aminotransferase; Catalyzes the reversible conversion of aspartate and 2- oxoglutarate to glutamate and oxaloacetate. Can also transaminate prephenate in the presence of aspartate. Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. | Isocitrate dehydrogenase; Belongs to the isocitrate and isopropylmalate dehydrogenases family. | 0.824 |
aspC1 | mdh1 | aq_1969 | aq_1782 | Aspartate aminotransferase; Catalyzes the reversible conversion of aspartate and 2- oxoglutarate to glutamate and oxaloacetate. Can also transaminate prephenate in the presence of aspartate. Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. | Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. | 0.909 |
aspC1 | mdh2 | aq_1969 | aq_1665 | Aspartate aminotransferase; Catalyzes the reversible conversion of aspartate and 2- oxoglutarate to glutamate and oxaloacetate. Can also transaminate prephenate in the presence of aspartate. Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. | Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. | 0.909 |
aspC1 | oadA | aq_1969 | aq_1614 | Aspartate aminotransferase; Catalyzes the reversible conversion of aspartate and 2- oxoglutarate to glutamate and oxaloacetate. Can also transaminate prephenate in the presence of aspartate. Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. | Oxaloacetate decarboxylase alpha chain. | 0.825 |
fumB | aspC1 | aq_1780 | aq_1969 | Fumarate hydratase (fumarase). | Aspartate aminotransferase; Catalyzes the reversible conversion of aspartate and 2- oxoglutarate to glutamate and oxaloacetate. Can also transaminate prephenate in the presence of aspartate. Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. | 0.800 |
fumB | fumX | aq_1780 | aq_1679 | Fumarate hydratase (fumarase). | C-terminal fumarate hydratase, class I. | 0.998 |
fumB | gltA | aq_1780 | aq_150 | Fumarate hydratase (fumarase). | Citrate synthase. | 0.480 |
fumB | icd | aq_1780 | aq_1512 | Fumarate hydratase (fumarase). | Isocitrate dehydrogenase; Belongs to the isocitrate and isopropylmalate dehydrogenases family. | 0.675 |
fumB | mdh1 | aq_1780 | aq_1782 | Fumarate hydratase (fumarase). | Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. | 0.988 |
fumB | mdh2 | aq_1780 | aq_1665 | Fumarate hydratase (fumarase). | Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. | 0.953 |
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