Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| aq_1442 | phoB | aq_1442 | aq_319 | Hypothetical protein. | Transcriptional regulator (PhoB-like). | 0.929 |
| aq_1442 | ppx | aq_1442 | aq_891 | Hypothetical protein. | Exopolyphosphatase. | 0.452 |
| aq_1442 | rpoS | aq_1442 | aq_1452 | Hypothetical protein. | RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.614 |
| aq_893 | fabD | aq_893 | aq_892 | Hypothetical protein. | malonyl-CoA:Acyl carrier protein transacylase. | 0.773 |
| aq_893 | ppx | aq_893 | aq_891 | Hypothetical protein. | Exopolyphosphatase. | 0.572 |
| fabD | aq_893 | aq_892 | aq_893 | malonyl-CoA:Acyl carrier protein transacylase. | Hypothetical protein. | 0.773 |
| fabD | ppx | aq_892 | aq_891 | malonyl-CoA:Acyl carrier protein transacylase. | Exopolyphosphatase. | 0.572 |
| glpK | ppx | aq_434 | aq_891 | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | Exopolyphosphatase. | 0.603 |
| obg | ppx | aq_2069 | aq_891 | GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | Exopolyphosphatase. | 0.815 |
| obg | spoT | aq_2069 | aq_844 | GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | (p)ppGpp 3-pyrophosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. This enzyme catalyzes the degradation of ppGpp into GDP. It may also be capable of catalyzing the synthesis of ppGpp (By similarity); Belongs to the RelA/SpoT family. | 0.527 |
| phoB | aq_1442 | aq_319 | aq_1442 | Transcriptional regulator (PhoB-like). | Hypothetical protein. | 0.929 |
| phoB | ppx | aq_319 | aq_891 | Transcriptional regulator (PhoB-like). | Exopolyphosphatase. | 0.858 |
| phoB | rpoS | aq_319 | aq_1452 | Transcriptional regulator (PhoB-like). | RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.722 |
| ppx | aq_1442 | aq_891 | aq_1442 | Exopolyphosphatase. | Hypothetical protein. | 0.452 |
| ppx | aq_893 | aq_891 | aq_893 | Exopolyphosphatase. | Hypothetical protein. | 0.572 |
| ppx | fabD | aq_891 | aq_892 | Exopolyphosphatase. | malonyl-CoA:Acyl carrier protein transacylase. | 0.572 |
| ppx | glpK | aq_891 | aq_434 | Exopolyphosphatase. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.603 |
| ppx | obg | aq_891 | aq_2069 | Exopolyphosphatase. | GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.815 |
| ppx | phoB | aq_891 | aq_319 | Exopolyphosphatase. | Transcriptional regulator (PhoB-like). | 0.858 |
| ppx | rpoS | aq_891 | aq_1452 | Exopolyphosphatase. | RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.608 |
page 1 of 2