STRINGSTRING
CV_1080 CV_1080 cheV3 cheV3 cheV1 cheV1 CV_3450 CV_3450 cheA2 cheA2 cheA1 cheA1 cheV2 cheV2 cheA cheA cheW3 cheW3 cheW1 cheW1 aer aer
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
CV_1080Probable methyl-accepting chemotaxis protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0840. (628 aa)    
Predicted Functional Partners:
cheV3
Chemotaxis protein CheV; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0784.
 
 0.971
cheV1
Chemotaxis protein CheV; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0784.
 
 0.962
CV_3450
Probable chemotaxis protein CheA; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0643.
 
  0.960
cheA2
Chemotaxis protein CheA; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0643.
 
  0.959
cheA1
Chemotaxis protein CheA; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0643.
 
  0.959
cheV2
Chemotaxis protein CheV; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0784.
 
 0.959
cheA
Chemotaxis protein CheA; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0643.
 
  0.956
cheW3
Signal transduction chemotaxis protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0835.
 
 0.939
cheW1
Signal transduction chemotaxis protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0835.
 
 0.934
aer
Aerotaxis receptor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2202.
 
 0.923
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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