Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK69956.1 | ABK70020.1 | MSMEG_6594 | MSMEG_1200 | Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726. | Serine/threonine-protein kinase PknD; Identified by match to protein family HMM PF00069; match to protein family HMM PF00497. | 0.528 |
| ABK69956.1 | ABK73127.1 | MSMEG_6594 | MSMEG_3236 | Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726. | ABC-type amino acid transport system, permease component; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726. | 0.447 |
| ABK70020.1 | ABK69956.1 | MSMEG_1200 | MSMEG_6594 | Serine/threonine-protein kinase PknD; Identified by match to protein family HMM PF00069; match to protein family HMM PF00497. | Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726. | 0.528 |
| ABK70020.1 | ABK72306.1 | MSMEG_1200 | MSMEG_0033 | Serine/threonine-protein kinase PknD; Identified by match to protein family HMM PF00069; match to protein family HMM PF00497. | Protein phosphatase 2C; Identified by match to protein family HMM PF00481. | 0.868 |
| ABK70020.1 | ABK73127.1 | MSMEG_1200 | MSMEG_3236 | Serine/threonine-protein kinase PknD; Identified by match to protein family HMM PF00069; match to protein family HMM PF00497. | ABC-type amino acid transport system, permease component; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726. | 0.542 |
| ABK70020.1 | ABK73969.1 | MSMEG_1200 | MSMEG_0035 | Serine/threonine-protein kinase PknD; Identified by match to protein family HMM PF00069; match to protein family HMM PF00497. | FHA domain protein; Identified by match to protein family HMM PF00498. | 0.567 |
| ABK70020.1 | ABK74109.1 | MSMEG_1200 | MSMEG_1642 | Serine/threonine-protein kinase PknD; Identified by match to protein family HMM PF00069; match to protein family HMM PF00497. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00498; match to protein family HMM PF01061. | 0.555 |
| ABK70020.1 | ABK75945.1 | MSMEG_1200 | MSMEG_1928 | Serine/threonine-protein kinase PknD; Identified by match to protein family HMM PF00069; match to protein family HMM PF00497. | Identified by match to protein family HMM PF00481. | 0.875 |
| ABK70020.1 | fhaB | MSMEG_1200 | MSMEG_0034 | Serine/threonine-protein kinase PknD; Identified by match to protein family HMM PF00069; match to protein family HMM PF00497. | FHA domain protein; Regulates growth and cell division. Probably required for divisomal protein assembly under oxidative stress. | 0.547 |
| ABK70020.1 | garA | MSMEG_1200 | MSMEG_3647 | Serine/threonine-protein kinase PknD; Identified by match to protein family HMM PF00069; match to protein family HMM PF00497. | Forkhead-associated protein; Involved in regulation of glutamate metabolism. Acts as a phosphorylation-dependent molecular switch that modulates the activities of Kgd and Gdh. | 0.752 |
| ABK70020.1 | pknB | MSMEG_1200 | MSMEG_0028 | Serine/threonine-protein kinase PknD; Identified by match to protein family HMM PF00069; match to protein family HMM PF00497. | Serine-threonine protein kinase; Protein kinase that regulates many aspects of mycobacterial physiology. Is a key component of a signal transduction pathway that regulates cell growth, cell shape and cell division via phosphorylation of target proteins (By similarity). Probably phosphorylates RseA. | 0.603 |
| ABK70020.1 | pknG | MSMEG_1200 | MSMEG_0786 | Serine/threonine-protein kinase PknD; Identified by match to protein family HMM PF00069; match to protein family HMM PF00497. | Serine/threonine protein kinase; Identified by match to protein family HMM PF00069; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. | 0.595 |
| ABK72306.1 | ABK70020.1 | MSMEG_0033 | MSMEG_1200 | Protein phosphatase 2C; Identified by match to protein family HMM PF00481. | Serine/threonine-protein kinase PknD; Identified by match to protein family HMM PF00069; match to protein family HMM PF00497. | 0.868 |
| ABK72306.1 | ABK73969.1 | MSMEG_0033 | MSMEG_0035 | Protein phosphatase 2C; Identified by match to protein family HMM PF00481. | FHA domain protein; Identified by match to protein family HMM PF00498. | 0.829 |
| ABK72306.1 | ABK74109.1 | MSMEG_0033 | MSMEG_1642 | Protein phosphatase 2C; Identified by match to protein family HMM PF00481. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00498; match to protein family HMM PF01061. | 0.422 |
| ABK72306.1 | fhaB | MSMEG_0033 | MSMEG_0034 | Protein phosphatase 2C; Identified by match to protein family HMM PF00481. | FHA domain protein; Regulates growth and cell division. Probably required for divisomal protein assembly under oxidative stress. | 0.957 |
| ABK72306.1 | garA | MSMEG_0033 | MSMEG_3647 | Protein phosphatase 2C; Identified by match to protein family HMM PF00481. | Forkhead-associated protein; Involved in regulation of glutamate metabolism. Acts as a phosphorylation-dependent molecular switch that modulates the activities of Kgd and Gdh. | 0.703 |
| ABK72306.1 | pknB | MSMEG_0033 | MSMEG_0028 | Protein phosphatase 2C; Identified by match to protein family HMM PF00481. | Serine-threonine protein kinase; Protein kinase that regulates many aspects of mycobacterial physiology. Is a key component of a signal transduction pathway that regulates cell growth, cell shape and cell division via phosphorylation of target proteins (By similarity). Probably phosphorylates RseA. | 0.998 |
| ABK72306.1 | pknG | MSMEG_0033 | MSMEG_0786 | Protein phosphatase 2C; Identified by match to protein family HMM PF00481. | Serine/threonine protein kinase; Identified by match to protein family HMM PF00069; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. | 0.813 |
| ABK73127.1 | ABK69956.1 | MSMEG_3236 | MSMEG_6594 | ABC-type amino acid transport system, permease component; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726. | Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726. | 0.447 |
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