Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK69697.1 | ABK69759.1 | MSMEG_1925 | MSMEG_0029 | Isochorismate synthase DhbC; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Anthranilate synthase component 2; Identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566. | 0.772 |
| ABK69697.1 | ABK71866.1 | MSMEG_1925 | MSMEG_5536 | Isochorismate synthase DhbC; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis. | 0.897 |
| ABK69697.1 | ABK74300.1 | MSMEG_1925 | MSMEG_2111 | Isochorismate synthase DhbC; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate. May play some role in the pathogenicity. | 0.910 |
| ABK69697.1 | ABK75414.1 | MSMEG_1925 | MSMEG_4524 | Isochorismate synthase DhbC; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Anthranilate synthase component I; Identified by match to protein family HMM PF00425. | 0.938 |
| ABK69697.1 | aroC | MSMEG_1925 | MSMEG_3030 | Isochorismate synthase DhbC; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.940 |
| ABK69697.1 | pheA | MSMEG_1925 | MSMEG_6418 | Isochorismate synthase DhbC; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Prephenate dehydratase; Identified by match to protein family HMM PF00800; match to protein family HMM PF01842. | 0.486 |
| ABK69697.1 | trpE | MSMEG_1925 | MSMEG_3217 | Isochorismate synthase DhbC; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...] | 0.872 |
| ABK69759.1 | ABK69697.1 | MSMEG_0029 | MSMEG_1925 | Anthranilate synthase component 2; Identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566. | Isochorismate synthase DhbC; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | 0.772 |
| ABK69759.1 | ABK71789.1 | MSMEG_0029 | MSMEG_6330 | Anthranilate synthase component 2; Identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566. | Prephenate dehydrogenase; Identified by match to protein family HMM PF02153. | 0.427 |
| ABK69759.1 | ABK71866.1 | MSMEG_0029 | MSMEG_5536 | Anthranilate synthase component 2; Identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566. | Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis. | 0.914 |
| ABK69759.1 | ABK74300.1 | MSMEG_0029 | MSMEG_2111 | Anthranilate synthase component 2; Identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566. | Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate. May play some role in the pathogenicity. | 0.897 |
| ABK69759.1 | ABK75414.1 | MSMEG_0029 | MSMEG_4524 | Anthranilate synthase component 2; Identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566. | Anthranilate synthase component I; Identified by match to protein family HMM PF00425. | 0.994 |
| ABK69759.1 | aroC | MSMEG_0029 | MSMEG_3030 | Anthranilate synthase component 2; Identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.931 |
| ABK69759.1 | aroG | MSMEG_0029 | MSMEG_4244 | Anthranilate synthase component 2; Identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566. | 3-deoxy-7-phosphoheptulonate synthase; Catalyzes an aldol-like condensation reaction between phosphoenolpyruvate (PEP) and D-erythrose 4-phosphate (E4P) to generate 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAH7P) and inorganic phosphate. | 0.435 |
| ABK69759.1 | pheA | MSMEG_0029 | MSMEG_6418 | Anthranilate synthase component 2; Identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566. | Prephenate dehydratase; Identified by match to protein family HMM PF00800; match to protein family HMM PF01842. | 0.588 |
| ABK69759.1 | trpE | MSMEG_0029 | MSMEG_3217 | Anthranilate synthase component 2; Identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566. | Anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...] | 0.999 |
| ABK71789.1 | ABK69759.1 | MSMEG_6330 | MSMEG_0029 | Prephenate dehydrogenase; Identified by match to protein family HMM PF02153. | Anthranilate synthase component 2; Identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566. | 0.427 |
| ABK71789.1 | ABK71866.1 | MSMEG_6330 | MSMEG_5536 | Prephenate dehydrogenase; Identified by match to protein family HMM PF02153. | Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis. | 0.965 |
| ABK71789.1 | ABK74300.1 | MSMEG_6330 | MSMEG_2111 | Prephenate dehydrogenase; Identified by match to protein family HMM PF02153. | Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate. May play some role in the pathogenicity. | 0.952 |
| ABK71789.1 | ABK75279.1 | MSMEG_6330 | MSMEG_3442 | Prephenate dehydrogenase; Identified by match to protein family HMM PF02153. | Cyclohexadienyl dehydratase; Identified by match to protein family HMM PF00497. | 0.919 |
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