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sodA sodA BP0194 BP0194 BP0187 BP0187 BP0200 BP0200 BP0157 BP0157 BP0191 BP0191 rplQ rplQ rplM rplM rplO rplO ybeY ybeY rplC rplC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
sodASuperoxide dismutase [Mn]; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the iron/manganese superoxide dismutase family. (211 aa)    
Predicted Functional Partners:
BP0194
Probable metal transporter; Similar to Pseudomonas aeruginosa hypothetical protein Pa4467 TR:Q9HVV1 (EMBL:AE004860) (310 aa) fasta scores: E(): 2.5e-41, 54.864% id in 257 aa, and to Myxococcus xanthus GufA protein SW:GUFA_MYXXA (Q06916) (254 aa) fasta scores: E(): 2.1e-36, 49.412% id in 255 aa. Also similar to BP2140, 47.458% identity (47.782% ungapped) in 295 aa overlap.
  
  
 0.986
BP0187
Putative lyase; Similar to Streptomyces coelicolor putative lyase Sci7.11C TR:Q9X9X9 (EMBL:AL096743) (130 aa) fasta scores: E(): 0.0041, 33.846% id in 130 aa, and to Streptomyces sp daunomycin C-14 hydroxylase TR:Q55078 (EMBL:U50973) (275 aa) fasta scores: E(): 0.015, 29.851% id in 134 aa.
   
    0.872
BP0200
Putative exported protein; Similar to Pseudomonas putida and Pseudomonas sp hypothetical 34.5 kDa protein in clcB-clcD intergenic region precursor SW:YCLC_PSEPU (Q47100) (329 aa) fasta scores: E(): 1.3e-33, 36.246% id in 309 aa, and to Rhizobium meliloti conserved hypothetical protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.8e-32, 34.663% id in 326 aa.
   
    0.847
BP0157
Two-component sensor kinase; Member of a two-component regulatory system.
   
 
 0.831
BP0191
Putative exported protein; Similar to Rhizobium meliloti conserved hypothetical protein Smc00763 TR:CAC45279 (EMBL:AL591784) (394 aa) fasta scores: E(): 4.8e-59, 57.431% id in 397 aa, and to Haemophilus influenzae hypothetical protein Hi0933 SW:YHIN_HAEIN (P44941) (401 aa) fasta scores: E(): 5.7e-65, 44.444% id in 396 aa.
  
    0.816
rplQ
Similar to Escherichia coli 50S ribosomal protein L17 RplQ SW:RL17_ECOLI (P02416) (127 aa) fasta scores: E(): 5.3e-32, 68.5% id in 127 aa, and to Neisseria meningitidis 50S ribosomal protein L17 NMB0169 TR:Q9K1I1 (EMBL:AE002374) (122 aa) fasta scores: E(): 2.5e-35, 75.41% id in 122 aa.
   
   0.816
rplM
50s ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.811
rplO
50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
  
 
 0.809
ybeY
Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
   
 
 0.804
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
  
 
 0.804
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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