Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| RPA0403 | RPA0405 | RPA0403 | RPA0405 | Conserved hypothetical protein; COGs COG3339. | Conserved hypothetical protein; COGs COG2358. | 0.443 |
| RPA0403 | phhB | RPA0403 | RPA0404 | Conserved hypothetical protein; COGs COG3339. | Putative pterin-4-alpha-carbinolamine dehydratase; 6-pyruvoyl-tetrahydropterin synthase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1). | 0.615 |
| RPA0405 | RPA0403 | RPA0405 | RPA0403 | Conserved hypothetical protein; COGs COG2358. | Conserved hypothetical protein; COGs COG3339. | 0.443 |
| RPA0405 | phhB | RPA0405 | RPA0404 | Conserved hypothetical protein; COGs COG2358. | Putative pterin-4-alpha-carbinolamine dehydratase; 6-pyruvoyl-tetrahydropterin synthase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1). | 0.564 |
| RPA1184 | RPA1188 | RPA1184 | RPA1188 | DUF58. | Possible poly(A) polymerase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.548 |
| RPA1184 | phhB | RPA1184 | RPA0404 | DUF58. | Putative pterin-4-alpha-carbinolamine dehydratase; 6-pyruvoyl-tetrahydropterin synthase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1). | 0.428 |
| RPA1188 | RPA1184 | RPA1188 | RPA1184 | Possible poly(A) polymerase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | DUF58. | 0.548 |
| RPA1188 | phhB | RPA1188 | RPA0404 | Possible poly(A) polymerase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Putative pterin-4-alpha-carbinolamine dehydratase; 6-pyruvoyl-tetrahydropterin synthase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1). | 0.548 |
| cbbZ | moaA | RPA1980 | RPA1978 | Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family. | Molybdenum biosynthetic protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. | 0.859 |
| cbbZ | phhB | RPA1980 | RPA0404 | Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family. | Putative pterin-4-alpha-carbinolamine dehydratase; 6-pyruvoyl-tetrahydropterin synthase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1). | 0.514 |
| fahA | hmgA | RPA4670 | RPA4672 | Fumarylacetoacetate hydrolase. | Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate. | 0.989 |
| fahA | hpd | RPA4670 | RPA0005 | Fumarylacetoacetate hydrolase. | 4-hydroxyphenylpyruvate dioxygenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | 0.866 |
| fahA | maiA | RPA4670 | RPA4671 | Fumarylacetoacetate hydrolase. | Putative maleylacetoacetate isomerase. | 0.973 |
| fahA | phhB | RPA4670 | RPA0404 | Fumarylacetoacetate hydrolase. | Putative pterin-4-alpha-carbinolamine dehydratase; 6-pyruvoyl-tetrahydropterin synthase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1). | 0.652 |
| hmgA | fahA | RPA4672 | RPA4670 | Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate. | Fumarylacetoacetate hydrolase. | 0.989 |
| hmgA | hpd | RPA4672 | RPA0005 | Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate. | 4-hydroxyphenylpyruvate dioxygenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | 0.997 |
| hmgA | maiA | RPA4672 | RPA4671 | Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate. | Putative maleylacetoacetate isomerase. | 0.988 |
| hmgA | phhB | RPA4672 | RPA0404 | Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate. | Putative pterin-4-alpha-carbinolamine dehydratase; 6-pyruvoyl-tetrahydropterin synthase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1). | 0.688 |
| hpd | fahA | RPA0005 | RPA4670 | 4-hydroxyphenylpyruvate dioxygenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | Fumarylacetoacetate hydrolase. | 0.866 |
| hpd | hmgA | RPA0005 | RPA4672 | 4-hydroxyphenylpyruvate dioxygenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate. | 0.997 |
page 1 of 2