STRINGSTRING
RPA1041 RPA1041 RPA1042 RPA1042 RPA4739 RPA4739 RPA1183 RPA1183 RPA3156 RPA3156 RPA1043 RPA1043 RPA1182 RPA1182 RPA0346 RPA0346 RPA1040 RPA1040 RPA3686 RPA3686 rsmI rsmI
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA1041Conserved hypothetical protein. (75 aa)    
Predicted Functional Partners:
RPA1042
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.884
RPA4739
Conserved hypothetical protein.
 
    0.694
RPA1183
Conserved unknown protein.
  
    0.667
RPA3156
Conserved hypothetical protein.
  
     0.646
RPA1043
Possible protease SohB; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
    0.626
RPA1182
Conserved hypothetical protein.
  
    0.605
RPA0346
Conserved hypothetical protein.
  
     0.569
RPA1040
Octaprenyl-diphosphate synthase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the FPP/GGPP synthase family.
       0.559
RPA3686
NLP/P60.
 
    0.546
rsmI
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.534
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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