STRINGSTRING
CHU_3789 CHU_3789 CHU_3790 CHU_3790 CHU_3791 CHU_3791 CHU_3788 CHU_3788 CHU_3792 CHU_3792 xylR-2 xylR-2 CHU_3051 CHU_3051 CHU_3793 CHU_3793
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHU_3789Conserved hypothetical protein. (137 aa)    
Predicted Functional Partners:
CHU_3790
Conserved hypothetical protein.
 
     0.753
CHU_3791
Conserved hypothetical protein.
 
     0.700
CHU_3788
Hypothetical protein.
       0.668
CHU_3792
Hypothetical protein.
       0.607
xylR-2
Transcriptional regulator, AraC family with amidase-like domain.
       0.502
CHU_3051
Hypothetical protein.
  
     0.436
CHU_3793
Conserved hypothetical protein.
       0.403
Your Current Organism:
Cytophaga hutchinsonii
NCBI taxonomy Id: 269798
Other names: C. hutchinsonii ATCC 33406, Cytophaga hutchinsonii ATCC 33406, Cytophaga hutchinsonii str. ATCC 33406, Cytophaga hutchinsonii strain ATCC 33406
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