STRINGSTRING
glgB glgB Tfu_1891 Tfu_1891 Tfu_2205 Tfu_2205 Tfu_0586 Tfu_0586 glgE glgE Tfu_0584 Tfu_0584 Tfu_0583 Tfu_0583 Tfu_0985 Tfu_0985 atpD atpD ispF ispF Tfu_0224 Tfu_0224
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glgB1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. (749 aa)    
Predicted Functional Partners:
Tfu_1891
Glycogen debranching enzyme GlgX; Belongs to the glycosyl hydrolase 13 family.
 
0.999
Tfu_2205
Glycoside hydrolase, family 77.
 
 0.999
Tfu_0586
Alpha-glucan phosphorylase.
 
 0.998
glgE
Alpha amylase, catalytic subdomain; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
 
 
 0.997
Tfu_0584
Trehalose synthase. Glycosyl Hydrolase family 13.
  
 
0.996
Tfu_0583
Putative pep2 protein.
 
  
 0.995
Tfu_0985
Alpha amylase, C-terminal all-beta:Alpha amylase, catalytic subdomain.
  
 
 0.938
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 0.917
ispF
MECDP-synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).
     
 0.792
Tfu_0224
trehalose-phosphatase:HAD-superfamily hydrolase subfamily IIB; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
  
 
 0.788
Your Current Organism:
Thermobifida fusca
NCBI taxonomy Id: 269800
Other names: T. fusca YX, Thermobifida fusca YX, Thermobifida fusca str. YX, Thermobifida fusca strain YX
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.