Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Tfu_0120 | Tfu_2370 | Tfu_0120 | Tfu_2370 | Putative serine protease. | Mov34/MPN/PAD-1. | 0.488 |
| Tfu_0120 | arc | Tfu_0120 | Tfu_1809 | Putative serine protease. | Vesicle-fusing ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.792 |
| Tfu_0120 | glpK | Tfu_0120 | Tfu_0787 | Putative serine protease. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.645 |
| Tfu_0120 | prcA | Tfu_0120 | Tfu_1789 | Putative serine protease. | Putative 20S proteasome alpha-subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family. | 0.451 |
| Tfu_0120 | prcB | Tfu_0120 | Tfu_1790 | Putative serine protease. | Bacterial proteasome, beta component. Threonine peptidase. MEROPS family T01B; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family. | 0.451 |
| Tfu_0353 | Tfu_0507 | Tfu_0353 | Tfu_0507 | Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain. | Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain. | 0.918 |
| Tfu_0353 | Tfu_2370 | Tfu_0353 | Tfu_2370 | Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain. | Mov34/MPN/PAD-1. | 0.488 |
| Tfu_0353 | arc | Tfu_0353 | Tfu_1809 | Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain. | Vesicle-fusing ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.792 |
| Tfu_0353 | glpK | Tfu_0353 | Tfu_0787 | Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.637 |
| Tfu_0353 | prcA | Tfu_0353 | Tfu_1789 | Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain. | Putative 20S proteasome alpha-subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family. | 0.451 |
| Tfu_0353 | prcB | Tfu_0353 | Tfu_1790 | Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain. | Bacterial proteasome, beta component. Threonine peptidase. MEROPS family T01B; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family. | 0.451 |
| Tfu_0507 | Tfu_0353 | Tfu_0507 | Tfu_0353 | Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain. | Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain. | 0.918 |
| Tfu_0507 | Tfu_2370 | Tfu_0507 | Tfu_2370 | Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain. | Mov34/MPN/PAD-1. | 0.488 |
| Tfu_0507 | arc | Tfu_0507 | Tfu_1809 | Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain. | Vesicle-fusing ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.792 |
| Tfu_0507 | glpK | Tfu_0507 | Tfu_0787 | Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.637 |
| Tfu_0507 | prcA | Tfu_0507 | Tfu_1789 | Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain. | Putative 20S proteasome alpha-subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family. | 0.451 |
| Tfu_0507 | prcB | Tfu_0507 | Tfu_1790 | Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain. | Bacterial proteasome, beta component. Threonine peptidase. MEROPS family T01B; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family. | 0.451 |
| Tfu_1796 | arc | Tfu_1796 | Tfu_1809 | Putative proteasome component. | Vesicle-fusing ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.923 |
| Tfu_1796 | prcA | Tfu_1796 | Tfu_1789 | Putative proteasome component. | Putative 20S proteasome alpha-subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family. | 0.892 |
| Tfu_1796 | prcB | Tfu_1796 | Tfu_1790 | Putative proteasome component. | Bacterial proteasome, beta component. Threonine peptidase. MEROPS family T01B; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family. | 0.884 |
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