Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| APE_0748.1 | pyrF | APE_0748.1 | APE_2348 | Conserved hypothetical protein. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.410 |
| APE_0748.1 | ribC | APE_0748.1 | APE_0988 | Conserved hypothetical protein. | Riboflavin synthase; Belongs to the DMRL synthase family. | 0.434 |
| APE_0748.1 | truB | APE_0748.1 | APE_0989.1 | Conserved hypothetical protein. | Small nucleolar RNP protein Cbf5; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. | 0.596 |
| APE_0985.1 | ribB | APE_0985.1 | APE_0986.1 | Hypothetical protein. | 3,4-dihydroxy-2-butanone 4-phosphate synthase. | 0.497 |
| APE_0985.1 | ribC | APE_0985.1 | APE_0988 | Hypothetical protein. | Riboflavin synthase; Belongs to the DMRL synthase family. | 0.497 |
| APE_1031.1 | ribC | APE_1031.1 | APE_0988 | Conserved hypothetical protein. | Riboflavin synthase; Belongs to the DMRL synthase family. | 0.548 |
| csl4 | ribC | APE_0445 | APE_0988 | Exosome complex RNA-binding protein Cs14 homologue; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs. | Riboflavin synthase; Belongs to the DMRL synthase family. | 0.429 |
| mtaP | ribB | APE_0993.1 | APE_0986.1 | S-methyl-5-thioadenosine phosphorylase. | 3,4-dihydroxy-2-butanone 4-phosphate synthase. | 0.432 |
| mtaP | ribC | APE_0993.1 | APE_0988 | S-methyl-5-thioadenosine phosphorylase. | Riboflavin synthase; Belongs to the DMRL synthase family. | 0.424 |
| mtaP | truB | APE_0993.1 | APE_0989.1 | S-methyl-5-thioadenosine phosphorylase. | Small nucleolar RNP protein Cbf5; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. | 0.594 |
| pyrF | APE_0748.1 | APE_2348 | APE_0748.1 | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | Conserved hypothetical protein. | 0.410 |
| pyrF | ribB | APE_2348 | APE_0986.1 | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 3,4-dihydroxy-2-butanone 4-phosphate synthase. | 0.459 |
| pyrF | ribC | APE_2348 | APE_0988 | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | Riboflavin synthase; Belongs to the DMRL synthase family. | 0.500 |
| pyrF | ribH | APE_2348 | APE_1366.1 | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. | 0.499 |
| ribB | APE_0985.1 | APE_0986.1 | APE_0985.1 | 3,4-dihydroxy-2-butanone 4-phosphate synthase. | Hypothetical protein. | 0.497 |
| ribB | mtaP | APE_0986.1 | APE_0993.1 | 3,4-dihydroxy-2-butanone 4-phosphate synthase. | S-methyl-5-thioadenosine phosphorylase. | 0.432 |
| ribB | pyrF | APE_0986.1 | APE_2348 | 3,4-dihydroxy-2-butanone 4-phosphate synthase. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.459 |
| ribB | ribC | APE_0986.1 | APE_0988 | 3,4-dihydroxy-2-butanone 4-phosphate synthase. | Riboflavin synthase; Belongs to the DMRL synthase family. | 0.906 |
| ribB | ribH | APE_0986.1 | APE_1366.1 | 3,4-dihydroxy-2-butanone 4-phosphate synthase. | 6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. | 0.999 |
| ribB | truB | APE_0986.1 | APE_0989.1 | 3,4-dihydroxy-2-butanone 4-phosphate synthase. | Small nucleolar RNP protein Cbf5; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. | 0.623 |
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