Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
APE_0072 | cobA | APE_0072 | APE_0236.1 | Heme exporter protein C. | uroporphyrin-III C-methyltransferase; SUMT; Belongs to the precorrin methyltransferase family. | 0.699 |
APE_0072 | hemA | APE_0072 | APE_2296 | Heme exporter protein C. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.710 |
APE_0072 | hemB | APE_0072 | APE_2300.1 | Heme exporter protein C. | Porphobilinogen synthase; ALADH; delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. | 0.528 |
APE_0072 | hemC | APE_0072 | APE_2298.1 | Heme exporter protein C. | Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. | 0.659 |
APE_0072 | hemL | APE_0072 | APE_2130.1 | Heme exporter protein C. | Glutamate-1-semialdehyde aminotransferase; GSA; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.444 |
APE_0072 | hemL-2 | APE_0072 | APE_2299.1 | Heme exporter protein C. | Glutamate-1-semialdehyde aminotransferase; GSA; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. HemL subfamily. | 0.444 |
APE_2295.1 | hemA | APE_2295.1 | APE_2296 | Conserved hypothetical protein. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.605 |
APE_2295.1 | hemB | APE_2295.1 | APE_2300.1 | Conserved hypothetical protein. | Porphobilinogen synthase; ALADH; delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. | 0.533 |
APE_2295.1 | hemC | APE_2295.1 | APE_2298.1 | Conserved hypothetical protein. | Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. | 0.605 |
APE_2295.1 | hemL-2 | APE_2295.1 | APE_2299.1 | Conserved hypothetical protein. | Glutamate-1-semialdehyde aminotransferase; GSA; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. HemL subfamily. | 0.605 |
cobA | APE_0072 | APE_0236.1 | APE_0072 | uroporphyrin-III C-methyltransferase; SUMT; Belongs to the precorrin methyltransferase family. | Heme exporter protein C. | 0.699 |
cobA | cobS | APE_0236.1 | APE_2037.1 | uroporphyrin-III C-methyltransferase; SUMT; Belongs to the precorrin methyltransferase family. | Cobalamin synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family. | 0.655 |
cobA | hemA | APE_0236.1 | APE_2296 | uroporphyrin-III C-methyltransferase; SUMT; Belongs to the precorrin methyltransferase family. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.727 |
cobA | hemB | APE_0236.1 | APE_2300.1 | uroporphyrin-III C-methyltransferase; SUMT; Belongs to the precorrin methyltransferase family. | Porphobilinogen synthase; ALADH; delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. | 0.832 |
cobA | hemC | APE_0236.1 | APE_2298.1 | uroporphyrin-III C-methyltransferase; SUMT; Belongs to the precorrin methyltransferase family. | Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. | 0.987 |
cobA | sirC | APE_0236.1 | APE_1491.1 | uroporphyrin-III C-methyltransferase; SUMT; Belongs to the precorrin methyltransferase family. | Precorrin-2 dehydrogenase. | 0.989 |
cobS | cobA | APE_2037.1 | APE_0236.1 | Cobalamin synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family. | uroporphyrin-III C-methyltransferase; SUMT; Belongs to the precorrin methyltransferase family. | 0.655 |
cobS | gltX | APE_2037.1 | APE_2317.1 | Cobalamin synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family. | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). | 0.463 |
cobS | hemA | APE_2037.1 | APE_2296 | Cobalamin synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.596 |
cobS | hemB | APE_2037.1 | APE_2300.1 | Cobalamin synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family. | Porphobilinogen synthase; ALADH; delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. | 0.447 |
page 1 of 4