Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
cytH | gch3 | rrnAC1232 | rrnAC0115 | Adenylate cyclase. | Unknown; Catalyzes the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. Also has an independent pyrophosphate phosphohydrolase activity; Belongs to the archaeal-type GTP cyclohydrolase family. | 0.825 |
cytH | ilvA1 | rrnAC1232 | rrnAC1231 | Adenylate cyclase. | Threonine dehydratase. | 0.638 |
cytH | metK | rrnAC1232 | rrnAC1233 | Adenylate cyclase. | S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP; Belongs to the AdoMet synthase 2 family. | 0.830 |
cytH | moaA | rrnAC1232 | rrnAC1314 | Adenylate cyclase. | Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate; Belongs to the radical SAM superfamily. MoaA family. | 0.816 |
cytH | mptA | rrnAC1232 | rrnAC3309 | Adenylate cyclase. | Unknown; Converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate, the first intermediate in the biosynthesis of coenzyme methanopterin. | 0.800 |
cytH | ndk | rrnAC1232 | rrnAC0106 | Adenylate cyclase. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. | 0.916 |
cytH | pykA | rrnAC1232 | rrnAC0546 | Adenylate cyclase. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.900 |
cytH | rrnAC1742 | rrnAC1232 | rrnAC1742 | Adenylate cyclase. | Unknown. | 0.603 |
cytH | slyD | rrnAC1232 | rrnAC1230 | Adenylate cyclase. | Peptidyl-prolyl cis-trans isomerase. | 0.667 |
cytH | thiI | rrnAC1232 | rrnAC1234 | Adenylate cyclase. | Probable thiamine biosynthesis protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.674 |
gch3 | cytH | rrnAC0115 | rrnAC1232 | Unknown; Catalyzes the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. Also has an independent pyrophosphate phosphohydrolase activity; Belongs to the archaeal-type GTP cyclohydrolase family. | Adenylate cyclase. | 0.825 |
gch3 | ndk | rrnAC0115 | rrnAC0106 | Unknown; Catalyzes the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. Also has an independent pyrophosphate phosphohydrolase activity; Belongs to the archaeal-type GTP cyclohydrolase family. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. | 0.800 |
gch3 | pykA | rrnAC0115 | rrnAC0546 | Unknown; Catalyzes the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. Also has an independent pyrophosphate phosphohydrolase activity; Belongs to the archaeal-type GTP cyclohydrolase family. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.800 |
ilvA1 | cytH | rrnAC1231 | rrnAC1232 | Threonine dehydratase. | Adenylate cyclase. | 0.638 |
ilvA1 | metK | rrnAC1231 | rrnAC1233 | Threonine dehydratase. | S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP; Belongs to the AdoMet synthase 2 family. | 0.439 |
ilvA1 | slyD | rrnAC1231 | rrnAC1230 | Threonine dehydratase. | Peptidyl-prolyl cis-trans isomerase. | 0.583 |
metK | cytH | rrnAC1233 | rrnAC1232 | S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP; Belongs to the AdoMet synthase 2 family. | Adenylate cyclase. | 0.830 |
metK | ilvA1 | rrnAC1233 | rrnAC1231 | S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP; Belongs to the AdoMet synthase 2 family. | Threonine dehydratase. | 0.439 |
metK | rrnAC1742 | rrnAC1233 | rrnAC1742 | S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP; Belongs to the AdoMet synthase 2 family. | Unknown. | 0.514 |
metK | slyD | rrnAC1233 | rrnAC1230 | S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP; Belongs to the AdoMet synthase 2 family. | Peptidyl-prolyl cis-trans isomerase. | 0.661 |
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