Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KPN_00631 | KPN_00632 | KPN_00631 | KPN_00632 | Putative periplasmic binding protein/LacI transcriptional regulator. | Putative cytosine deaminase and related metal-dependent hydrolases. | 0.605 |
KPN_00632 | KPN_00631 | KPN_00632 | KPN_00631 | Putative cytosine deaminase and related metal-dependent hydrolases. | Putative periplasmic binding protein/LacI transcriptional regulator. | 0.605 |
KPN_00632 | KPN_00633 | KPN_00632 | KPN_00633 | Putative cytosine deaminase and related metal-dependent hydrolases. | Putative cytosine permease/transport. | 0.843 |
KPN_00632 | KPN_02036 | KPN_00632 | KPN_02036 | Putative cytosine deaminase and related metal-dependent hydrolases. | Putative cytosine deaminase. | 0.624 |
KPN_00632 | aegA | KPN_00632 | KPN_02802 | Putative cytosine deaminase and related metal-dependent hydrolases. | Putative oxidoreductase, Fe-S subunit (anaerobically expressed gene). | 0.661 |
KPN_00632 | codA | KPN_00632 | KPN_03751 | Putative cytosine deaminase and related metal-dependent hydrolases. | Putative cytosine deaminase. | 0.659 |
KPN_00632 | deoA | KPN_00632 | KPN_04838 | Putative cytosine deaminase and related metal-dependent hydrolases. | Thymidine phosphorylase; The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis. Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family. | 0.699 |
KPN_00632 | pyrD | KPN_00632 | KPN_00974 | Putative cytosine deaminase and related metal-dependent hydrolases. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.590 |
KPN_00632 | udp | KPN_00632 | KPN_04327 | Putative cytosine deaminase and related metal-dependent hydrolases. | Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis. Belongs to the PNP/UDP phosphorylase family. | 0.666 |
KPN_00632 | upp | KPN_00632 | KPN_02821 | Putative cytosine deaminase and related metal-dependent hydrolases. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.878 |
KPN_00632 | ygdH | KPN_00632 | KPN_03138 | Putative cytosine deaminase and related metal-dependent hydrolases. | Hypothetical protein. | 0.661 |
KPN_00633 | KPN_00632 | KPN_00633 | KPN_00632 | Putative cytosine permease/transport. | Putative cytosine deaminase and related metal-dependent hydrolases. | 0.843 |
KPN_00633 | KPN_02036 | KPN_00633 | KPN_02036 | Putative cytosine permease/transport. | Putative cytosine deaminase. | 0.762 |
KPN_00633 | codA | KPN_00633 | KPN_03751 | Putative cytosine permease/transport. | Putative cytosine deaminase. | 0.827 |
KPN_00633 | pyrD | KPN_00633 | KPN_00974 | Putative cytosine permease/transport. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.572 |
KPN_00633 | upp | KPN_00633 | KPN_02821 | Putative cytosine permease/transport. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.456 |
KPN_02036 | KPN_00632 | KPN_02036 | KPN_00632 | Putative cytosine deaminase. | Putative cytosine deaminase and related metal-dependent hydrolases. | 0.624 |
KPN_02036 | KPN_00633 | KPN_02036 | KPN_00633 | Putative cytosine deaminase. | Putative cytosine permease/transport. | 0.762 |
KPN_02036 | aegA | KPN_02036 | KPN_02802 | Putative cytosine deaminase. | Putative oxidoreductase, Fe-S subunit (anaerobically expressed gene). | 0.661 |
KPN_02036 | codA | KPN_02036 | KPN_03751 | Putative cytosine deaminase. | Putative cytosine deaminase. | 0.622 |
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