Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
gloB | lpg1294 | lpg1295 | lpg1294 | Hydroxyacylglutathione hydrolase GloB; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid. | Membrane bound lytic murein transglycosylase D. | 0.597 |
gloB | rlmJ | lpg1295 | lpg1296 | Hydroxyacylglutathione hydrolase GloB; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid. | Protein involved in catabolism of external DNA; Specifically methylates the adenine in position 2030 of 23S rRNA. | 0.800 |
lpg1291 | rlmJ | lpg1291 | lpg1296 | Two component sensor kinase. | Protein involved in catabolism of external DNA; Specifically methylates the adenine in position 2030 of 23S rRNA. | 0.401 |
lpg1294 | gloB | lpg1294 | lpg1295 | Membrane bound lytic murein transglycosylase D. | Hydroxyacylglutathione hydrolase GloB; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid. | 0.597 |
lpg1294 | rlmJ | lpg1294 | lpg1296 | Membrane bound lytic murein transglycosylase D. | Protein involved in catabolism of external DNA; Specifically methylates the adenine in position 2030 of 23S rRNA. | 0.541 |
rlmJ | gloB | lpg1296 | lpg1295 | Protein involved in catabolism of external DNA; Specifically methylates the adenine in position 2030 of 23S rRNA. | Hydroxyacylglutathione hydrolase GloB; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid. | 0.800 |
rlmJ | lpg1291 | lpg1296 | lpg1291 | Protein involved in catabolism of external DNA; Specifically methylates the adenine in position 2030 of 23S rRNA. | Two component sensor kinase. | 0.401 |
rlmJ | lpg1294 | lpg1296 | lpg1294 | Protein involved in catabolism of external DNA; Specifically methylates the adenine in position 2030 of 23S rRNA. | Membrane bound lytic murein transglycosylase D. | 0.541 |