STRINGSTRING
hupR hupR hupT hupT hupF hupF hupG hupG hupH hupH hupJ hupJ hupK hupK hupV hupV hupD hupD hupU hupU rpoN rpoN
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hupRHydrogenase transcriptional regulator HupR. (492 aa)    
Predicted Functional Partners:
hupT
Signal transduction histidine kinase HupT.
 
 0.997
hupF
Hydrogenase maturation chaperone HupF.
 
   0.947
hupG
Hydrogenase expression/formation protein HupG; Belongs to the HupG/HyaE family.
 
    0.942
hupH
Hydrogenase expression/formation protein HupH.
 
     0.941
hupJ
Rubredoxin HupJ.
 
   
 0.940
hupK
Hydrogenase expression/formation protein HupK.
 
     0.929
hupV
Uptake hydrogenase, large subunit.
 
  
 0.925
hupD
Hydrogenase maturation protease HupD.
 
     0.920
hupU
Uptake hydrogenase, small subunit.
 
   
 0.898
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is responsible for the expression of the nitrogen fixation genes. The open complex (sigma-54 and core RNA polymerase) serves as the receptor for receipt of the melting signal from the remotely bound activator protein nifA for the expression of the nitrogen fixation proteins.
 
   
 0.890
Your Current Organism:
Rhodobacter capsulatus
NCBI taxonomy Id: 272942
Other names: R. capsulatus SB 1003, Rhodobacter capsulatus SB 1003
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