STRINGSTRING
RSP_3134 RSP_3134 RSP_3492 RSP_3492 RSP_3135 RSP_3135 RSP_3132 RSP_3132 RSP_3133 RSP_3133 RSP_3129 RSP_3129 RSP_3131 RSP_3131 RSP_6164 RSP_6164 RSP_3483 RSP_3483 RSP_3130 RSP_3130 RSP_3486 RSP_3486
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3134IMG reference gene:2512956643; PFAM: Protein kinase domain; truncated by 3 aa. (424 aa)    
Predicted Functional Partners:
RSP_3492
Protein phosphatase 2C; IMG reference gene:2512957002; PFAM: Protein phosphatase 2C.
 
 0.895
RSP_3135
ppkA-related protein; IMG reference gene:2512956644.
    0.811
RSP_3132
ABC-type transport system, involved in lipoprotein release, permease component; IMG reference gene:2512956640.
 
    0.781
RSP_3133
Hypothetical protein; IMG reference gene:2512956641; PFAM: Formylglycine-generating sulfatase enzyme.
 
  
 0.779
RSP_3129
IMG reference gene:2512956637; PFAM: Protein kinase domain.
 
   
0.776
RSP_3131
ABC (antimicrobial peptide) transporter, ATPase subunit; IMG reference gene:2512956639; PFAM: ABC transporter.
  
    0.737
RSP_6164
Hypothetical protein; IMG reference gene:2512956642.
       0.733
RSP_3483
FHA domain protein; IMG reference gene:2512956993; PFAM: FHA domain; TIGRFAM: type VI secretion system FHA domain protein.
 
  
 0.681
RSP_3130
Putative serine protease; IMG reference gene:2512956638; PFAM: FHA domain.
  
    0.680
RSP_3486
Putative outer membrane protein, OmpA family; IMG reference gene:2512956996; PFAM: OmpA family; Uncharacterized protein conserved in bacteria (DUF2077); TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein.
 
    0.647
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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