STRINGSTRING
SelD SelD SelA SelA SelB SelB CsdB CsdB TrxB TrxB TrxB2 TrxB2 SirA3 SirA3 NifS2 NifS2 NifS NifS TTE2027 TTE2027 CsdB2 CsdB2
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
SelDSelenophosphate synthase; Synthesizes selenophosphate from selenide and ATP. (320 aa)    
Predicted Functional Partners:
SelA
Selenocysteine synthase (seryl-tRNASer selenium transferase); Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.998
SelB
Best Blastp hit = gi|5763687|emb|CAB53235.1| (AJ245960) elongation factor SelB [Eubacterium acidaminophilum], score 573, E-value 1.00E-162.
 
   
 0.983
CsdB
Selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
   
 0.921
TrxB
Thioredoxin reductase; Best Blastp hit = gi|11065685|emb|CAC14297.1| (AJ276209) thioredoxin reductase [Clostridium sticklandii], score 344, E-value 1.00E-93.
     
 0.908
TrxB2
Thioredoxin reductase; Best Blastp hit = gi|1717776|sp|P52213|TRXB_CLOLI THIOREDOXIN REDUCTASE (TRXR) gi|2117556|pir||S63990 thioredoxin reductase (NADPH) (EC 1.6.4.5) - Clostridium litorale gi|1171125|gb|AAC43575.1| (U24268) thioredoxin reductase [Clostridium litorale], score 268, E-value 9.00E-71.
     
 0.908
SirA3
Predicted Transcriptional regulator; Best Blastp hit = gi|11346752|pir||E81297 hypothetical protein Cj1505c [imported] - Campylobacter jejuni (strain NCTC 11168) gi|6968930|emb|CAB73926.1| (AL139078) hypothetical protein Cj1505c [Campylobacter jejuni], score 114, E-value 9.00E-25; Belongs to the sulfur carrier protein TusA family.
 
   
 0.898
NifS2
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
    
 0.879
NifS
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; Best Blastp hit = gi|13431585|sp|P57795|ISCS_METTE PROBABLE CYSTEINE DESULFURASE (NIFS PROTEIN HOMOLOG) gi|9887215|gb|AAG01802.1|AF276772_1 (AF276772) cysteine desulfurase NifS [Methanosarcina thermophila], score 358, E-value 9.00E-98.
    
 0.831
TTE2027
Antirestriction protein; Best Blastp hit = gi|13475143|ref|NP_106707.1| antirestriction protein [Mesorhizobium loti] gi|14025894|dbj|BAB52493.1| (AP003008) antirestriction protein [Mesorhizobium loti], score 115, E-value 7.00E-25.
 
      0.634
CsdB2
Selenocysteine lyase; Best Blastp hit = gi|10176681|dbj|BAB07775.1| (AP001520) aminotransferase required for NAD biosynthesis (NifS protein) [Bacillus halodurans], score 311, E-value 1.00E-83.
   
 0.606
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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