Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| BBta_5215 | tatA | BBta_5215 | BBta_4417 | Putative membrane protein of unknown function with Rhomboid-like family domain; Evidence: Similar to previously reported genes of unknown function; Localization: 11 : Membrane. | Putative Sec-independent protein translocase protein TatA/E; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.716 |
| BBta_5215 | tatB | BBta_5215 | BBta_4416 | Putative membrane protein of unknown function with Rhomboid-like family domain; Evidence: Similar to previously reported genes of unknown function; Localization: 11 : Membrane. | Putative sec-independent protein secretion pathway component TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation. | 0.607 |
| BBta_5280 | tatA | BBta_5280 | BBta_4417 | Putative membrane protein of unknown function with rhomboid family domain; Evidence: No homology to any previously reported sequences. | Putative Sec-independent protein translocase protein TatA/E; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.716 |
| BBta_5280 | tatB | BBta_5280 | BBta_4416 | Putative membrane protein of unknown function with rhomboid family domain; Evidence: No homology to any previously reported sequences. | Putative sec-independent protein secretion pathway component TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation. | 0.607 |
| BBta_7801 | tatA | BBta_7801 | BBta_4417 | Putative membrane protein of unknown function with rhomboid family protein domain; Evidence: Similar to previously reported genes of unknown function. | Putative Sec-independent protein translocase protein TatA/E; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.716 |
| BBta_7801 | tatB | BBta_7801 | BBta_4416 | Putative membrane protein of unknown function with rhomboid family protein domain; Evidence: Similar to previously reported genes of unknown function. | Putative sec-independent protein secretion pathway component TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation. | 0.607 |
| fliL | tatA | BBta_5508 | BBta_4417 | Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | Putative Sec-independent protein translocase protein TatA/E; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.650 |
| fliL | tatB | BBta_5508 | BBta_4416 | Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | Putative sec-independent protein secretion pathway component TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation. | 0.602 |
| guaA | tatA | BBta_3614 | BBta_4417 | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | Putative Sec-independent protein translocase protein TatA/E; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.937 |
| guaA | tatB | BBta_3614 | BBta_4416 | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | Putative sec-independent protein secretion pathway component TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation. | 0.937 |
| guaA | tatC | BBta_3614 | BBta_4415 | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | Putative Sec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. | 0.447 |
| hisE-2 | tatA | BBta_0957 | BBta_4417 | phosphoribosyl-ATP pyrophosphatase; (hisE-like); Evidence: Function of strongly homologous gene; Localization: 2 : Cytoplasmic. | Putative Sec-independent protein translocase protein TatA/E; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.710 |
| nifN | norE | BBta_5921 | BBta_2086 | Nitrogenase reductase-associated ferredoxin, nifN; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic; Belongs to the NifD/NifK/NifE/NifN family. | NorE protein involved in nitric oxide reduction; Evidence: Function of strongly homologous gene; Localization: 5 : Inner membrane protein. | 0.765 |
| nifN | tatA | BBta_5921 | BBta_4417 | Nitrogenase reductase-associated ferredoxin, nifN; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic; Belongs to the NifD/NifK/NifE/NifN family. | Putative Sec-independent protein translocase protein TatA/E; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.753 |
| nifN | tatB | BBta_5921 | BBta_4416 | Nitrogenase reductase-associated ferredoxin, nifN; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic; Belongs to the NifD/NifK/NifE/NifN family. | Putative sec-independent protein secretion pathway component TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation. | 0.753 |
| nifN | tatC | BBta_5921 | BBta_4415 | Nitrogenase reductase-associated ferredoxin, nifN; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic; Belongs to the NifD/NifK/NifE/NifN family. | Putative Sec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. | 0.753 |
| norE | nifN | BBta_2086 | BBta_5921 | NorE protein involved in nitric oxide reduction; Evidence: Function of strongly homologous gene; Localization: 5 : Inner membrane protein. | Nitrogenase reductase-associated ferredoxin, nifN; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic; Belongs to the NifD/NifK/NifE/NifN family. | 0.765 |
| norE | tatA | BBta_2086 | BBta_4417 | NorE protein involved in nitric oxide reduction; Evidence: Function of strongly homologous gene; Localization: 5 : Inner membrane protein. | Putative Sec-independent protein translocase protein TatA/E; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.856 |
| norE | tatB | BBta_2086 | BBta_4416 | NorE protein involved in nitric oxide reduction; Evidence: Function of strongly homologous gene; Localization: 5 : Inner membrane protein. | Putative sec-independent protein secretion pathway component TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation. | 0.856 |
| norE | tatC | BBta_2086 | BBta_4415 | NorE protein involved in nitric oxide reduction; Evidence: Function of strongly homologous gene; Localization: 5 : Inner membrane protein. | Putative Sec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. | 0.860 |
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