Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Clim_0871 | Clim_1125 | TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cph:Cpha266_1167 methylmalonyl-CoA epimerase. | PFAM: transcriptional coactivator/pterin dehydratase; KEGG: plt:Plut_0106 pterin-4A-carbinolamine dehydratase. | 0.498 |
Clim_1123 | Clim_1124 | PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: plt:Plut_1072 2-oxoacid:ferredoxin oxidoreductase, alpha subunit. | TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: plt:Plut_1073 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate. | 0.999 |
Clim_1123 | Clim_1125 | PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: plt:Plut_1072 2-oxoacid:ferredoxin oxidoreductase, alpha subunit. | PFAM: transcriptional coactivator/pterin dehydratase; KEGG: plt:Plut_0106 pterin-4A-carbinolamine dehydratase. | 0.615 |
Clim_1124 | Clim_1123 | TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: plt:Plut_1073 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate. | PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: plt:Plut_1072 2-oxoacid:ferredoxin oxidoreductase, alpha subunit. | 0.999 |
Clim_1124 | Clim_1125 | TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: plt:Plut_1073 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate. | PFAM: transcriptional coactivator/pterin dehydratase; KEGG: plt:Plut_0106 pterin-4A-carbinolamine dehydratase. | 0.615 |
Clim_1125 | Clim_0871 | PFAM: transcriptional coactivator/pterin dehydratase; KEGG: plt:Plut_0106 pterin-4A-carbinolamine dehydratase. | TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cph:Cpha266_1167 methylmalonyl-CoA epimerase. | 0.498 |
Clim_1125 | Clim_1123 | PFAM: transcriptional coactivator/pterin dehydratase; KEGG: plt:Plut_0106 pterin-4A-carbinolamine dehydratase. | PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: plt:Plut_1072 2-oxoacid:ferredoxin oxidoreductase, alpha subunit. | 0.615 |
Clim_1125 | Clim_1124 | PFAM: transcriptional coactivator/pterin dehydratase; KEGG: plt:Plut_0106 pterin-4A-carbinolamine dehydratase. | TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: plt:Plut_1073 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate. | 0.615 |