node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Arth_0813 | Arth_0906 | Arth_0813 | Arth_0906 | TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: sco:SCO4797 putative ATP-dependent DNA helicase II. | TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: sco:SCO0918 excinuclease ABC subunit A. | 0.664 |
Arth_0813 | Arth_2199 | Arth_0813 | Arth_2199 | TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: sco:SCO4797 putative ATP-dependent DNA helicase II. | PFAM: ABC transporter related; KEGG: sma:SAV2097 UvrA-like protein. | 0.624 |
Arth_0813 | Arth_2753 | Arth_0813 | Arth_2753 | TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: sco:SCO4797 putative ATP-dependent DNA helicase II. | ATP-dependent DNA helicase, Rep family; PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: sco:SCO5188 putative ATP-dependent DNA helicase. | 0.968 |
Arth_0813 | polA | Arth_0813 | Arth_2063 | TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: sco:SCO4797 putative ATP-dependent DNA helicase II. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.607 |
Arth_0813 | recA | Arth_0813 | Arth_1460 | TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: sco:SCO4797 putative ATP-dependent DNA helicase II. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.836 |
Arth_0813 | ruvA | Arth_0813 | Arth_2302 | TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: sco:SCO4797 putative ATP-dependent DNA helicase II. | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.424 |
Arth_0813 | ruvB | Arth_0813 | Arth_2301 | TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: sco:SCO4797 putative ATP-dependent DNA helicase II. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.672 |
Arth_0813 | uvrA | Arth_0813 | Arth_2079 | TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: sco:SCO4797 putative ATP-dependent DNA helicase II. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.717 |
Arth_0813 | uvrB | Arth_0813 | Arth_2070 | TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: sco:SCO4797 putative ATP-dependent DNA helicase II. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.911 |
Arth_0813 | uvrC | Arth_0813 | Arth_2082 | TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: sco:SCO4797 putative ATP-dependent DNA helicase II. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.816 |
Arth_0906 | Arth_0813 | Arth_0906 | Arth_0813 | TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: sco:SCO0918 excinuclease ABC subunit A. | TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: sco:SCO4797 putative ATP-dependent DNA helicase II. | 0.664 |
Arth_0906 | Arth_2753 | Arth_0906 | Arth_2753 | TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: sco:SCO0918 excinuclease ABC subunit A. | ATP-dependent DNA helicase, Rep family; PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: sco:SCO5188 putative ATP-dependent DNA helicase. | 0.581 |
Arth_0906 | polA | Arth_0906 | Arth_2063 | TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: sco:SCO0918 excinuclease ABC subunit A. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.527 |
Arth_0906 | recA | Arth_0906 | Arth_1460 | TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: sco:SCO0918 excinuclease ABC subunit A. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.588 |
Arth_0906 | ruvA | Arth_0906 | Arth_2302 | TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: sco:SCO0918 excinuclease ABC subunit A. | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.548 |
Arth_0906 | ruvB | Arth_0906 | Arth_2301 | TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: sco:SCO0918 excinuclease ABC subunit A. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.664 |
Arth_0906 | uvrA | Arth_0906 | Arth_2079 | TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: sco:SCO0918 excinuclease ABC subunit A. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.908 |
Arth_0906 | uvrB | Arth_0906 | Arth_2070 | TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: sco:SCO0918 excinuclease ABC subunit A. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.978 |
Arth_0906 | uvrC | Arth_0906 | Arth_2082 | TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: sco:SCO0918 excinuclease ABC subunit A. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.821 |
Arth_2199 | Arth_0813 | Arth_2199 | Arth_0813 | PFAM: ABC transporter related; KEGG: sma:SAV2097 UvrA-like protein. | TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: sco:SCO4797 putative ATP-dependent DNA helicase II. | 0.624 |