Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Avi_0605 | Avi_4157 | Avi_0605 | Avi_4157 | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | Secreted alkaline phosphatase protein. | 0.957 |
Avi_0605 | exsC | Avi_0605 | Avi_3717 | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | 6-pyruvoyl tetrahydropterin synthase. | 0.900 |
Avi_0605 | folB | Avi_0605 | Avi_2247 | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin. | 0.900 |
Avi_0605 | folE | Avi_0605 | Avi_2207 | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | GTP cyclohydrolase I. | 0.901 |
Avi_4157 | Avi_0605 | Avi_4157 | Avi_0605 | Secreted alkaline phosphatase protein. | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | 0.957 |
Avi_4157 | exsC | Avi_4157 | Avi_3717 | Secreted alkaline phosphatase protein. | 6-pyruvoyl tetrahydropterin synthase. | 0.900 |
Avi_4157 | folB | Avi_4157 | Avi_2247 | Secreted alkaline phosphatase protein. | Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin. | 0.924 |
Avi_4157 | folE | Avi_4157 | Avi_2207 | Secreted alkaline phosphatase protein. | GTP cyclohydrolase I. | 0.935 |
exsC | Avi_0605 | Avi_3717 | Avi_0605 | 6-pyruvoyl tetrahydropterin synthase. | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | 0.900 |
exsC | Avi_4157 | Avi_3717 | Avi_4157 | 6-pyruvoyl tetrahydropterin synthase. | Secreted alkaline phosphatase protein. | 0.900 |
exsC | folE | Avi_3717 | Avi_2207 | 6-pyruvoyl tetrahydropterin synthase. | GTP cyclohydrolase I. | 0.984 |
folB | Avi_0605 | Avi_2247 | Avi_0605 | Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin. | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | 0.900 |
folB | Avi_4157 | Avi_2247 | Avi_4157 | Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin. | Secreted alkaline phosphatase protein. | 0.924 |
folB | folE | Avi_2247 | Avi_2207 | Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin. | GTP cyclohydrolase I. | 0.971 |
folB | folK | Avi_2247 | Avi_2248 | Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin. | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase. | 0.999 |
folB | folP | Avi_2247 | Avi_2246 | Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin. | Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives. | 0.999 |
folB | ribA | Avi_2247 | Avi_1014 | Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin. | 34-dihydroxy-2-butanone-4-phoshate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.625 |
folE | Avi_0605 | Avi_2207 | Avi_0605 | GTP cyclohydrolase I. | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | 0.901 |
folE | Avi_4157 | Avi_2207 | Avi_4157 | GTP cyclohydrolase I. | Secreted alkaline phosphatase protein. | 0.935 |
folE | exsC | Avi_2207 | Avi_3717 | GTP cyclohydrolase I. | 6-pyruvoyl tetrahydropterin synthase. | 0.984 |
page 1 of 3