Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RPC_0264 | RPC_0388 | Thioredoxin-related. | Thioredoxin; Belongs to the thioredoxin family. | 0.421 |
RPC_0264 | RPC_1458 | Thioredoxin-related. | FAD-dependent pyridine nucleotide-disulphide oxidoreductase. | 0.783 |
RPC_0264 | RPC_1920 | Thioredoxin-related. | 1-Cys peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. | 0.599 |
RPC_0264 | RPC_4443 | Thioredoxin-related. | Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen. | 0.599 |
RPC_0264 | RPC_4452 | Thioredoxin-related. | Nitrogen-fixing NifU-like; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | 0.533 |
RPC_0388 | RPC_0264 | Thioredoxin; Belongs to the thioredoxin family. | Thioredoxin-related. | 0.421 |
RPC_0388 | RPC_1458 | Thioredoxin; Belongs to the thioredoxin family. | FAD-dependent pyridine nucleotide-disulphide oxidoreductase. | 0.872 |
RPC_0388 | RPC_1920 | Thioredoxin; Belongs to the thioredoxin family. | 1-Cys peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. | 0.611 |
RPC_0388 | RPC_4443 | Thioredoxin; Belongs to the thioredoxin family. | Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen. | 0.621 |
RPC_0388 | RPC_4452 | Thioredoxin; Belongs to the thioredoxin family. | Nitrogen-fixing NifU-like; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | 0.533 |
RPC_1457 | RPC_1458 | Ferredoxin. | FAD-dependent pyridine nucleotide-disulphide oxidoreductase. | 0.760 |
RPC_1457 | RPC_4452 | Ferredoxin. | Nitrogen-fixing NifU-like; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | 0.913 |
RPC_1458 | RPC_0264 | FAD-dependent pyridine nucleotide-disulphide oxidoreductase. | Thioredoxin-related. | 0.783 |
RPC_1458 | RPC_0388 | FAD-dependent pyridine nucleotide-disulphide oxidoreductase. | Thioredoxin; Belongs to the thioredoxin family. | 0.872 |
RPC_1458 | RPC_1457 | FAD-dependent pyridine nucleotide-disulphide oxidoreductase. | Ferredoxin. | 0.760 |
RPC_1458 | RPC_1920 | FAD-dependent pyridine nucleotide-disulphide oxidoreductase. | 1-Cys peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. | 0.749 |
RPC_1458 | RPC_2837 | FAD-dependent pyridine nucleotide-disulphide oxidoreductase. | Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. | 0.907 |
RPC_1458 | RPC_3625 | FAD-dependent pyridine nucleotide-disulphide oxidoreductase. | Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide. | 0.739 |
RPC_1458 | RPC_3637 | FAD-dependent pyridine nucleotide-disulphide oxidoreductase. | Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. | 0.907 |
RPC_1458 | RPC_3767 | FAD-dependent pyridine nucleotide-disulphide oxidoreductase. | Hydrogenase-1 expression HyaE; Belongs to the HupG/HyaE family. | 0.683 |
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