node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Pden_2378 | Pden_3995 | Pden_2378 | Pden_3995 | PFAM: putative RNA methylase; KEGG: sit:TM1040_2415 putative RNA methylase. | Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | 0.671 |
Pden_2378 | argS | Pden_2378 | Pden_1870 | PFAM: putative RNA methylase; KEGG: sit:TM1040_2415 putative RNA methylase. | KEGG: rsp:RSP_2943 arginyl-tRNA synthetase, class I; TIGRFAM: arginyl-tRNA synthetase. | 0.419 |
Pden_2378 | pyrG | Pden_2378 | Pden_3711 | PFAM: putative RNA methylase; KEGG: sit:TM1040_2415 putative RNA methylase. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.558 |
Pden_2378 | trmFO | Pden_2378 | Pden_4078 | PFAM: putative RNA methylase; KEGG: sit:TM1040_2415 putative RNA methylase. | Gid protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. | 0.538 |
Pden_2720 | Pden_3995 | Pden_2720 | Pden_3995 | PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; methyltransferase small; KEGG: sil:SPO3376 ribosomal RNA small subunit methyltransferase B, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | 0.503 |
Pden_2720 | argS | Pden_2720 | Pden_1870 | PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; methyltransferase small; KEGG: sil:SPO3376 ribosomal RNA small subunit methyltransferase B, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | KEGG: rsp:RSP_2943 arginyl-tRNA synthetase, class I; TIGRFAM: arginyl-tRNA synthetase. | 0.556 |
Pden_2720 | pyrG | Pden_2720 | Pden_3711 | PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; methyltransferase small; KEGG: sil:SPO3376 ribosomal RNA small subunit methyltransferase B, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.561 |
Pden_2720 | rplY | Pden_2720 | Pden_4077 | PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; methyltransferase small; KEGG: sil:SPO3376 ribosomal RNA small subunit methyltransferase B, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.425 |
Pden_2720 | topA | Pden_2720 | Pden_0659 | PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; methyltransferase small; KEGG: sil:SPO3376 ribosomal RNA small subunit methyltransferase B, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.712 |
Pden_2720 | trmD | Pden_2720 | Pden_3883 | PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; methyltransferase small; KEGG: sil:SPO3376 ribosomal RNA small subunit methyltransferase B, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | tRNA (Guanine37-N(1)-) methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.424 |
Pden_2720 | trmFO | Pden_2720 | Pden_4078 | PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; methyltransferase small; KEGG: sil:SPO3376 ribosomal RNA small subunit methyltransferase B, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Gid protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. | 0.504 |
Pden_3995 | Pden_2378 | Pden_3995 | Pden_2378 | Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | PFAM: putative RNA methylase; KEGG: sit:TM1040_2415 putative RNA methylase. | 0.671 |
Pden_3995 | Pden_2720 | Pden_3995 | Pden_2720 | Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; methyltransferase small; KEGG: sil:SPO3376 ribosomal RNA small subunit methyltransferase B, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.503 |
Pden_3995 | pyrG | Pden_3995 | Pden_3711 | Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.660 |
Pden_3995 | trmD | Pden_3995 | Pden_3883 | Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | tRNA (Guanine37-N(1)-) methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.580 |
Pden_3995 | trmFO | Pden_3995 | Pden_4078 | Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | Gid protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. | 0.683 |
Pden_4079 | argS | Pden_4079 | Pden_1870 | PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: rsp:RSP_2628 glutamyl-/glutaminyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | KEGG: rsp:RSP_2943 arginyl-tRNA synthetase, class I; TIGRFAM: arginyl-tRNA synthetase. | 0.826 |
Pden_4079 | pyrG | Pden_4079 | Pden_3711 | PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: rsp:RSP_2628 glutamyl-/glutaminyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.567 |
Pden_4079 | rplY | Pden_4079 | Pden_4077 | PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: rsp:RSP_2628 glutamyl-/glutaminyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.588 |
Pden_4079 | trmFO | Pden_4079 | Pden_4078 | PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: rsp:RSP_2628 glutamyl-/glutaminyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | Gid protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. | 0.884 |