Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| def | rplD | SYNPCC7002_A2348 | SYNPCC7002_A1064 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.928 |
| def | rplQ | SYNPCC7002_A2348 | SYNPCC7002_A1041 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein L17; Similar to sll1819 in Synechocystis sp. PCC 6803. | 0.951 |
| def | rplR | SYNPCC7002_A2348 | SYNPCC7002_A1050 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.930 |
| def | rplU | SYNPCC7002_A2348 | SYNPCC7002_A0490 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.929 |
| def | rplV | SYNPCC7002_A2348 | SYNPCC7002_A1060 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.955 |
| def | rplX | SYNPCC7002_A2348 | SYNPCC7002_A1054 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.929 |
| def | rpsF | SYNPCC7002_A2348 | SYNPCC7002_A0443 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.929 |
| def | rpsT | SYNPCC7002_A2348 | SYNPCC7002_A2048 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.938 |
| def | rpsU | SYNPCC7002_A2348 | SYNPCC7002_A1741 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein S21; Similar to of Synechocystis sp. PCC 6803; Belongs to the bacterial ribosomal protein bS21 family. | 0.932 |
| def | tig | SYNPCC7002_A2348 | SYNPCC7002_A1276 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.937 |
| rplD | def | SYNPCC7002_A1064 | SYNPCC7002_A2348 | Ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.928 |
| rplD | rplQ | SYNPCC7002_A1064 | SYNPCC7002_A1041 | Ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Ribosomal protein L17; Similar to sll1819 in Synechocystis sp. PCC 6803. | 0.997 |
| rplD | rplR | SYNPCC7002_A1064 | SYNPCC7002_A1050 | Ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
| rplD | rplU | SYNPCC7002_A1064 | SYNPCC7002_A0490 | Ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.995 |
| rplD | rplV | SYNPCC7002_A1064 | SYNPCC7002_A1060 | Ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.999 |
| rplD | rplX | SYNPCC7002_A1064 | SYNPCC7002_A1054 | Ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.999 |
| rplD | rpsF | SYNPCC7002_A1064 | SYNPCC7002_A0443 | Ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.995 |
| rplD | rpsT | SYNPCC7002_A1064 | SYNPCC7002_A2048 | Ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.989 |
| rplD | rpsU | SYNPCC7002_A1064 | SYNPCC7002_A1741 | Ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Ribosomal protein S21; Similar to of Synechocystis sp. PCC 6803; Belongs to the bacterial ribosomal protein bS21 family. | 0.971 |
| rplD | tig | SYNPCC7002_A1064 | SYNPCC7002_A1276 | Ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.944 |
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