STRINGSTRING
Sama_2221 Sama_2221 Sama_2222 Sama_2222 Sama_1568 Sama_1568 Sama_1805 Sama_1805 Sama_1569 Sama_1569 Sama_1733 Sama_1733 Sama_2220 Sama_2220 Sama_0898 Sama_0898 Sama_2218 Sama_2218 Sama_2219 Sama_2219
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_2221KEGG: son:SO1667 pterin-4-alpha-carbinolamine dehydratase. (112 aa)    
Predicted Functional Partners:
Sama_2222
KEGG: son:SO1666 phenylalanine-4-hydroxylase.
 
 0.997
Sama_1568
KEGG: sdn:Sden_2163 4-hydroxyphenylpyruvate dioxygenase.
  
  
 0.781
Sama_1805
Aminotransferase; KEGG: son:SO2350 aspartate aminotransferase.
  
  
 0.684
Sama_1569
KEGG: son:SO1963 homogentisate 1,2-dioxygenase.
  
  
 0.677
Sama_1733
Aminotransferase; KEGG: sfr:Sfri_2126 aspartate transaminase.
  
  
 0.640
Sama_2220
KEGG: son:SO1669 transcriptional regulatory protein TyrR.
     
 0.551
Sama_0898
KEGG: son:SO1367 prephenate dehydratase / chorismate mutase / phospho-2-dehydro-3-deoxyheptonate aldolase.
     
 0.548
Sama_2218
KEGG: she:Shewmr4_2603 maleylacetoacetate isomerase.
  
  
 0.494
Sama_2219
KEGG: son:SO1670 fumarylacetoacetate hydrolase family protein.
  
  
 0.449
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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