STRINGSTRING
rnp4 rnp4 Saci_0615 Saci_0615 rnp2 rnp2 Saci_0589 Saci_0589 rpl7ae rpl7ae rps4 rps4 rps5 rps5 Saci_0026 Saci_0026 rps11 rps11 Saci_0032 Saci_0032 Saci_0031 Saci_0031
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnp4Conserved protein; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. (118 aa)    
Predicted Functional Partners:
Saci_0615
Conserved RNase_P_p30-like protein.
   
 0.999
rnp2
Conserved protein; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 2 family.
   
 0.998
Saci_0589
Conserved protein; Identification based on homology with Sulfolobus solfataricus and Sulfolobus tokodaii; upstream SD sequence was found.
    
 0.984
rpl7ae
50S ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.
  
 0.967
rps4
30S ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
 
 0.945
rps5
30S ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy.
   
 
 0.945
Saci_0026
Conserved Archaeal protein.
   
 
  0.938
rps11
30S ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.
   
 
  0.919
Saci_0032
Conserved protein.
       0.851
Saci_0031
Conserved Archaeal protein.
       0.830
Your Current Organism:
Sulfolobus acidocaldarius DSM 639
NCBI taxonomy Id: 330779
Other names: S. acidocaldarius DSM 639, Sulfolobus acidocaldarius ATCC 33909, Sulfolobus acidocaldarius NCIB 11770
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