STRINGSTRING
amb2500 amb2500 amb3451 amb3451 amb4000 amb4000 amb3447 amb3447 amb3261 amb3261 amb3699 amb3699 amb1945 amb1945 amb3405 amb3405 amb2499 amb2499 amb4344 amb4344 amb3602 amb3602
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2500HD-GYP domain. (370 aa)    
Predicted Functional Partners:
amb3451
Response regulator containing a CheY-like receiver domain and a GGDEF domain.
 
 0.953
amb4000
Response regulator containing a CheY-like receiver domain and a GGDEF domain.
 
 0.950
amb3447
Signal transduction histidine kinase.
 
      0.899
amb3261
FOG: GGDEF domain.
 
   
 0.870
amb3699
FOG: GGDEF domain.
 
   
 0.852
amb1945
Response regulator; Containing a CheY-like receiver domain and a GGDEF domain.
 
 0.787
amb3405
Response regulator containing a CheY-like receiver domain and a GGDEF domain; PAS/PAC domain.
 
 0.784
amb2499
Murein endopeptidase.
       0.778
amb4344
Response regulator containing a CheY-like receiver domain and a GGDEF domain.
 
 
 0.767
amb3602
FOG: GGDEF domain.
 
   
 0.749
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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