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mdh mdh Patl_1628 Patl_1628 Patl_1794 Patl_1794 Patl_2056 Patl_2056 Patl_3012 Patl_3012 Patl_0724 Patl_0724 pckA pckA Patl_4016 Patl_4016 glcB glcB Patl_4187 Patl_4187 ppc ppc
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
mdhMalate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. (311 aa)    
Predicted Functional Partners:
Patl_1628
Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
 
 0.996
Patl_1794
KEGG: ilo:IL1508 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; Belongs to the citrate synthase family.
  
 0.984
Patl_2056
Fumarase; PFAM: fumarate lyase; KEGG: pfl:PFL_0907 fumarate hydratase, class II.
  
 0.970
Patl_3012
TIGRFAM: oxaloacetate decarboxylase alpha subunit; PFAM: biotin/lipoyl attachment pyruvate carboxyltransferase Conserved carboxylase region; KEGG: pha:PSHAa0539 oxaloacetate decarboxylase.
    
 0.948
Patl_0724
PFAM: malic enzyme-like malic enzyme, NAD-binding; KEGG: ilo:IL0598 malic enzyme.
 
 0.947
pckA
Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. Belongs to the phosphoenolpyruvate carboxykinase (ATP) family.
 
 
 0.943
Patl_4016
PFAM: aminotransferase, class I and II; KEGG: cps:CPS_4970 aspartate aminotransferase.
   
 0.943
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
   
 0.938
Patl_4187
Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); PFAM: malic enzyme-like malic enzyme, NAD-binding; KEGG: ilo:IL2463 NADP-dependent malic enzyme.
  
 0.936
ppc
Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family.
     
 0.930
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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