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rps8e rps8e Mthe_0267 Mthe_0267 rpl7ae rpl7ae rps9 rps9 rpl30 rpl30 rpl24 rpl24 rpl23 rpl23 rpl10 rpl10 rpl22 rpl22 rpl31e rpl31e rpl3 rpl3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps8eTIGRFAM: ribosomal protein S8e; PFAM: ribosomal protein S8E; KEGG: mac:MA0923 ribosomal protein S8e. (127 aa)    
Predicted Functional Partners:
Mthe_0267
PFAM: GTP-binding protein, HSR1-related; Nucleolar GTP-binding 1; Miro domain protein; KEGG: mba:Mbar_A2164 GTP-binding protein.
  
 
 0.999
rpl7ae
LSU ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.
  
 
 0.999
rps9
PFAM: ribosomal protein S9; KEGG: mbu:Mbur_2390 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.999
rpl30
TIGRFAM: ribosomal protein L30P; PFAM: ribosomal protein L30; KEGG: mma:MM2145 LSU ribosomal protein L30P.
  
 
 0.999
rpl24
LSU ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
  
 
 0.999
rpl23
LSU ribosomal protein L23P; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family.
  
 
 0.999
rpl10
LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
  
 
 0.998
rpl22
LSU ribosomal protein L22P; This protein binds specifically to 23S rRNA. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.
  
 
 0.991
rpl31e
PFAM: Ribosomal protein L31e; KEGG: mma:MM0806 LSU ribosomal protein L31E; Belongs to the ribosomal protein L31e family.
  
 
 0.989
rpl3
LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
  
 
 0.985
Your Current Organism:
Methanothrix thermoacetophila
NCBI taxonomy Id: 349307
Other names: M. thermoacetophila PT, Methanosaeta thermophila PT, Methanothrix thermoacetophila PT, Methanothrix thermophila DSM 6194, Methanothrix thermophila PT
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