Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LRC432 | cyaB | LRC432 | LRC431 | Hypothetical protein. | Adenylate cyclase. | 0.563 |
RCIX1248 | cyaB | RCIX1248 | LRC431 | Conserved hypothetical protein. | Adenylate cyclase. | 0.455 |
RCIX2041 | cyaB | RCIX2041 | LRC431 | Putative nucleotide pyrophosphohydrolase (MazG family). | Adenylate cyclase. | 0.511 |
RCIX2041 | dacZ | RCIX2041 | RRC333 | Putative nucleotide pyrophosphohydrolase (MazG family). | Conserved hypothetical protein; Diadenylate cyclase that catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c-di-AMP is a second messenger for intracellular signal transduction involved in the control of important regulatory processes such as osmoregulation. | 0.499 |
cyaB | LRC432 | LRC431 | LRC432 | Adenylate cyclase. | Hypothetical protein. | 0.563 |
cyaB | RCIX1248 | LRC431 | RCIX1248 | Adenylate cyclase. | Conserved hypothetical protein. | 0.455 |
cyaB | RCIX2041 | LRC431 | RCIX2041 | Adenylate cyclase. | Putative nucleotide pyrophosphohydrolase (MazG family). | 0.511 |
cyaB | dacZ | LRC431 | RRC333 | Adenylate cyclase. | Conserved hypothetical protein; Diadenylate cyclase that catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c-di-AMP is a second messenger for intracellular signal transduction involved in the control of important regulatory processes such as osmoregulation. | 0.473 |
cyaB | moeA-5 | LRC431 | RCIX1842 | Adenylate cyclase. | Putative molybdopterin biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate; Belongs to the radical SAM superfamily. MoaA family. | 0.818 |
cyaB | mptA1 | LRC431 | RCIX633 | Adenylate cyclase. | Conserved hypothetical protein; Converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate, the first intermediate in the biosynthesis of coenzyme methanopterin. | 0.801 |
cyaB | mptA2 | LRC431 | LRC194 | Adenylate cyclase. | Conserved hypothetical protein; Converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate, the first intermediate in the biosynthesis of coenzyme methanopterin. | 0.801 |
cyaB | ndk | LRC431 | LRC143 | Adenylate cyclase. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. | 0.914 |
cyaB | nrdD | LRC431 | RCIX705 | Adenylate cyclase. | Anaerobic ribonucleoside-triphosphate reductase (glycyl-dependent). | 0.900 |
cyaB | pyk | LRC431 | LRC283 | Adenylate cyclase. | Pyruvate kinase (pyruvate phosphotransferase); Identical to orf1 of fosmid clone 3D10mr4; Belongs to the pyruvate kinase family. | 0.901 |
dacZ | RCIX2041 | RRC333 | RCIX2041 | Conserved hypothetical protein; Diadenylate cyclase that catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c-di-AMP is a second messenger for intracellular signal transduction involved in the control of important regulatory processes such as osmoregulation. | Putative nucleotide pyrophosphohydrolase (MazG family). | 0.499 |
dacZ | cyaB | RRC333 | LRC431 | Conserved hypothetical protein; Diadenylate cyclase that catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c-di-AMP is a second messenger for intracellular signal transduction involved in the control of important regulatory processes such as osmoregulation. | Adenylate cyclase. | 0.473 |
moeA-5 | cyaB | RCIX1842 | LRC431 | Putative molybdopterin biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate; Belongs to the radical SAM superfamily. MoaA family. | Adenylate cyclase. | 0.818 |
moeA-5 | mptA1 | RCIX1842 | RCIX633 | Putative molybdopterin biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate; Belongs to the radical SAM superfamily. MoaA family. | Conserved hypothetical protein; Converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate, the first intermediate in the biosynthesis of coenzyme methanopterin. | 0.900 |
moeA-5 | mptA2 | RCIX1842 | LRC194 | Putative molybdopterin biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate; Belongs to the radical SAM superfamily. MoaA family. | Conserved hypothetical protein; Converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate, the first intermediate in the biosynthesis of coenzyme methanopterin. | 0.900 |
moeA-5 | ndk | RCIX1842 | LRC143 | Putative molybdopterin biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate; Belongs to the radical SAM superfamily. MoaA family. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. | 0.803 |
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