node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rplM | rplN | BAB1_0811 | BAB1_1245 | Ribosomal protein L13:Ribosomal protein L13, bacterial and organelle form; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L14b/L23e:Ribosomal protein L14, bacterial and organelle form; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.999 |
rplM | rplO | BAB1_0811 | BAB1_1236 | Ribosomal protein L13:Ribosomal protein L13, bacterial and organelle form; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L15:Ribosomal protein L15, bacterial form; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.999 |
rplM | rplQ | BAB1_0811 | BAB1_1230 | Ribosomal protein L13:Ribosomal protein L13, bacterial and organelle form; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L17. | 0.999 |
rplM | rpmD | BAB1_0811 | BAB1_1237 | Ribosomal protein L13:Ribosomal protein L13, bacterial and organelle form; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L30:Ribosomal protein L30, bacterial and organelle form. | 0.999 |
rplM | rpsB | BAB1_0811 | BAB1_1184 | Ribosomal protein L13:Ribosomal protein L13, bacterial and organelle form; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S2:Ribosomal protein S2, bacterial and organelle form; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
rplM | rpsD | BAB1_0811 | BAB1_0851 | Ribosomal protein L13:Ribosomal protein L13, bacterial and organelle form; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Conserved hypothetical protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
rplM | rpsI | BAB1_0811 | BAB1_0810 | Ribosomal protein L13:Ribosomal protein L13, bacterial and organelle form; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
rplM | rpsK | BAB1_0811 | BAB1_1232 | Ribosomal protein L13:Ribosomal protein L13, bacterial and organelle form; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
rplM | rpsM | BAB1_0811 | BAB1_1233 | Ribosomal protein L13:Ribosomal protein L13, bacterial and organelle form; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
rplM | secY | BAB1_0811 | BAB1_1235 | Ribosomal protein L13:Ribosomal protein L13, bacterial and organelle form; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | C-5 cytosine-specific DNA methylase:SecY protein; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.997 |
rplN | rplM | BAB1_1245 | BAB1_0811 | Ribosomal protein L14b/L23e:Ribosomal protein L14, bacterial and organelle form; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | Ribosomal protein L13:Ribosomal protein L13, bacterial and organelle form; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
rplN | rplO | BAB1_1245 | BAB1_1236 | Ribosomal protein L14b/L23e:Ribosomal protein L14, bacterial and organelle form; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | Ribosomal protein L15:Ribosomal protein L15, bacterial form; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.999 |
rplN | rplQ | BAB1_1245 | BAB1_1230 | Ribosomal protein L14b/L23e:Ribosomal protein L14, bacterial and organelle form; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | Ribosomal protein L17. | 0.999 |
rplN | rpmD | BAB1_1245 | BAB1_1237 | Ribosomal protein L14b/L23e:Ribosomal protein L14, bacterial and organelle form; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | Ribosomal protein L30:Ribosomal protein L30, bacterial and organelle form. | 0.999 |
rplN | rpsB | BAB1_1245 | BAB1_1184 | Ribosomal protein L14b/L23e:Ribosomal protein L14, bacterial and organelle form; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | Ribosomal protein S2:Ribosomal protein S2, bacterial and organelle form; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
rplN | rpsD | BAB1_1245 | BAB1_0851 | Ribosomal protein L14b/L23e:Ribosomal protein L14, bacterial and organelle form; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | Conserved hypothetical protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
rplN | rpsI | BAB1_1245 | BAB1_0810 | Ribosomal protein L14b/L23e:Ribosomal protein L14, bacterial and organelle form; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
rplN | rpsK | BAB1_1245 | BAB1_1232 | Ribosomal protein L14b/L23e:Ribosomal protein L14, bacterial and organelle form; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
rplN | rpsM | BAB1_1245 | BAB1_1233 | Ribosomal protein L14b/L23e:Ribosomal protein L14, bacterial and organelle form; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
rplN | secY | BAB1_1245 | BAB1_1235 | Ribosomal protein L14b/L23e:Ribosomal protein L14, bacterial and organelle form; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | C-5 cytosine-specific DNA methylase:SecY protein; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.999 |