Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| infA | rplO | BAB1_0282 | BAB1_1236 | RNA binding S1:Translation initiation factor IF-1:S1 domain, IF1 type; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | Ribosomal protein L15:Ribosomal protein L15, bacterial form; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.993 |
| infA | rplQ | BAB1_0282 | BAB1_1230 | RNA binding S1:Translation initiation factor IF-1:S1 domain, IF1 type; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | Ribosomal protein L17. | 0.932 |
| infA | rpsB | BAB1_0282 | BAB1_1184 | RNA binding S1:Translation initiation factor IF-1:S1 domain, IF1 type; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | Ribosomal protein S2:Ribosomal protein S2, bacterial and organelle form; Belongs to the universal ribosomal protein uS2 family. | 0.998 |
| infA | rpsD | BAB1_0282 | BAB1_0851 | RNA binding S1:Translation initiation factor IF-1:S1 domain, IF1 type; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | Conserved hypothetical protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
| infA | rpsF | BAB1_0282 | BAB1_0480 | RNA binding S1:Translation initiation factor IF-1:S1 domain, IF1 type; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.973 |
| infA | rpsI | BAB1_0282 | BAB1_0810 | RNA binding S1:Translation initiation factor IF-1:S1 domain, IF1 type; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.965 |
| infA | rpsK | BAB1_0282 | BAB1_1232 | RNA binding S1:Translation initiation factor IF-1:S1 domain, IF1 type; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
| infA | rpsL | BAB1_0282 | BAB1_1260 | RNA binding S1:Translation initiation factor IF-1:S1 domain, IF1 type; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | Ribosomal protein S12, bacterial and chloroplast forms:Ribosomal protein S12/S23; With S4 and S5 plays an important role in translational accuracy. | 0.999 |
| infA | rpsM | BAB1_0282 | BAB1_1233 | RNA binding S1:Translation initiation factor IF-1:S1 domain, IF1 type; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
| rplO | infA | BAB1_1236 | BAB1_0282 | Ribosomal protein L15:Ribosomal protein L15, bacterial form; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | RNA binding S1:Translation initiation factor IF-1:S1 domain, IF1 type; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.993 |
| rplO | rplQ | BAB1_1236 | BAB1_1230 | Ribosomal protein L15:Ribosomal protein L15, bacterial form; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | Ribosomal protein L17. | 0.999 |
| rplO | rpsA | BAB1_1236 | BAB1_0025 | Ribosomal protein L15:Ribosomal protein L15, bacterial form; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | Ribosomal protein S1:RNA binding S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.994 |
| rplO | rpsB | BAB1_1236 | BAB1_1184 | Ribosomal protein L15:Ribosomal protein L15, bacterial form; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | Ribosomal protein S2:Ribosomal protein S2, bacterial and organelle form; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
| rplO | rpsD | BAB1_1236 | BAB1_0851 | Ribosomal protein L15:Ribosomal protein L15, bacterial form; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | Conserved hypothetical protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
| rplO | rpsF | BAB1_1236 | BAB1_0480 | Ribosomal protein L15:Ribosomal protein L15, bacterial form; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.998 |
| rplO | rpsI | BAB1_1236 | BAB1_0810 | Ribosomal protein L15:Ribosomal protein L15, bacterial form; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
| rplO | rpsK | BAB1_1236 | BAB1_1232 | Ribosomal protein L15:Ribosomal protein L15, bacterial form; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
| rplO | rpsL | BAB1_1236 | BAB1_1260 | Ribosomal protein L15:Ribosomal protein L15, bacterial form; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | Ribosomal protein S12, bacterial and chloroplast forms:Ribosomal protein S12/S23; With S4 and S5 plays an important role in translational accuracy. | 0.999 |
| rplO | rpsM | BAB1_1236 | BAB1_1233 | Ribosomal protein L15:Ribosomal protein L15, bacterial form; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
| rplQ | infA | BAB1_1230 | BAB1_0282 | Ribosomal protein L17. | RNA binding S1:Translation initiation factor IF-1:S1 domain, IF1 type; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.932 |
page 1 of 6