node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rplF | rplI | BAB1_1240 | BAB1_0477 | Ribosomal protein L6:Ribosomal protein L6, signature 1; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.999 |
rplF | rplM | BAB1_1240 | BAB1_0811 | Ribosomal protein L6:Ribosomal protein L6, signature 1; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein L13:Ribosomal protein L13, bacterial and organelle form; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
rplF | rplO | BAB1_1240 | BAB1_1236 | Ribosomal protein L6:Ribosomal protein L6, signature 1; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein L15:Ribosomal protein L15, bacterial form; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.999 |
rplF | rplR | BAB1_1240 | BAB1_1239 | Ribosomal protein L6:Ribosomal protein L6, signature 1; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein L18:Ribosomal protein L18P/L5E; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
rplF | rplU | BAB1_1240 | BAB1_1858 | Ribosomal protein L6:Ribosomal protein L6, signature 1; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
rplF | rpsB | BAB1_1240 | BAB1_1184 | Ribosomal protein L6:Ribosomal protein L6, signature 1; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein S2:Ribosomal protein S2, bacterial and organelle form; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
rplF | rpsD | BAB1_1240 | BAB1_0851 | Ribosomal protein L6:Ribosomal protein L6, signature 1; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Conserved hypothetical protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
rplF | rpsI | BAB1_1240 | BAB1_0810 | Ribosomal protein L6:Ribosomal protein L6, signature 1; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
rplF | rpsK | BAB1_1240 | BAB1_1232 | Ribosomal protein L6:Ribosomal protein L6, signature 1; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
rplF | rpsM | BAB1_1240 | BAB1_1233 | Ribosomal protein L6:Ribosomal protein L6, signature 1; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
rplI | rplF | BAB1_0477 | BAB1_1240 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein L6:Ribosomal protein L6, signature 1; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.999 |
rplI | rplM | BAB1_0477 | BAB1_0811 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein L13:Ribosomal protein L13, bacterial and organelle form; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.998 |
rplI | rplO | BAB1_0477 | BAB1_1236 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein L15:Ribosomal protein L15, bacterial form; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.998 |
rplI | rplR | BAB1_0477 | BAB1_1239 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein L18:Ribosomal protein L18P/L5E; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.998 |
rplI | rplU | BAB1_0477 | BAB1_1858 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
rplI | rpsB | BAB1_0477 | BAB1_1184 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein S2:Ribosomal protein S2, bacterial and organelle form; Belongs to the universal ribosomal protein uS2 family. | 0.998 |
rplI | rpsD | BAB1_0477 | BAB1_0851 | Ribosomal protein L9; Binds to the 23S rRNA. | Conserved hypothetical protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.998 |
rplI | rpsI | BAB1_0477 | BAB1_0810 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.998 |
rplI | rpsK | BAB1_0477 | BAB1_1232 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.998 |
rplI | rpsM | BAB1_0477 | BAB1_1233 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.997 |