Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABS51654.1 | ABS51716.1 | CHAB381_0895 | CHAB381_0900 | Bifunctional short chain isoprenyl diphosphate synthase; Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family. | valyl-tRNA synthetase. | 0.773 |
ABS51654.1 | ABS51883.1 | CHAB381_0895 | CHAB381_0898 | Bifunctional short chain isoprenyl diphosphate synthase; Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family. | Conserved hypothetical protein. | 0.791 |
ABS51654.1 | ABS52363.1 | CHAB381_0895 | CHAB381_0894 | Bifunctional short chain isoprenyl diphosphate synthase; Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family. | Conserved hypothetical protein. | 0.791 |
ABS51654.1 | hemA | CHAB381_0895 | CHAB381_0896 | Bifunctional short chain isoprenyl diphosphate synthase; Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.794 |
ABS51654.1 | hemC | CHAB381_0895 | CHAB381_0899 | Bifunctional short chain isoprenyl diphosphate synthase; Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family. | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.846 |
ABS51654.1 | proS | CHAB381_0895 | CHAB381_0897 | Bifunctional short chain isoprenyl diphosphate synthase; Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family. | prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...] | 0.791 |
ABS51716.1 | ABS51654.1 | CHAB381_0900 | CHAB381_0895 | valyl-tRNA synthetase. | Bifunctional short chain isoprenyl diphosphate synthase; Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family. | 0.773 |
ABS51716.1 | ABS51883.1 | CHAB381_0900 | CHAB381_0898 | valyl-tRNA synthetase. | Conserved hypothetical protein. | 0.773 |
ABS51716.1 | ABS52363.1 | CHAB381_0900 | CHAB381_0894 | valyl-tRNA synthetase. | Conserved hypothetical protein. | 0.773 |
ABS51716.1 | hemA | CHAB381_0900 | CHAB381_0896 | valyl-tRNA synthetase. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.773 |
ABS51716.1 | hemC | CHAB381_0900 | CHAB381_0899 | valyl-tRNA synthetase. | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.773 |
ABS51716.1 | proS | CHAB381_0900 | CHAB381_0897 | valyl-tRNA synthetase. | prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...] | 0.773 |
ABS51883.1 | ABS51654.1 | CHAB381_0898 | CHAB381_0895 | Conserved hypothetical protein. | Bifunctional short chain isoprenyl diphosphate synthase; Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family. | 0.791 |
ABS51883.1 | ABS51716.1 | CHAB381_0898 | CHAB381_0900 | Conserved hypothetical protein. | valyl-tRNA synthetase. | 0.773 |
ABS51883.1 | ABS52363.1 | CHAB381_0898 | CHAB381_0894 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.791 |
ABS51883.1 | hemA | CHAB381_0898 | CHAB381_0896 | Conserved hypothetical protein. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.791 |
ABS51883.1 | hemC | CHAB381_0898 | CHAB381_0899 | Conserved hypothetical protein. | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.791 |
ABS51883.1 | proS | CHAB381_0898 | CHAB381_0897 | Conserved hypothetical protein. | prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...] | 0.791 |
ABS52264.1 | hemA | CHAB381_1335 | CHAB381_0896 | Cytochrome c biogenesis protein, CcmF/CycK/CcsA family; Identified by match to protein family HMM PF01578; match to protein family HMM TIGR02595. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.642 |
ABS52264.1 | hemB | CHAB381_1335 | CHAB381_1698 | Cytochrome c biogenesis protein, CcmF/CycK/CcsA family; Identified by match to protein family HMM PF01578; match to protein family HMM TIGR02595. | Delta-aminolevulinic acid dehydratase; Identified by match to protein family HMM PF00490; Belongs to the ALAD family. | 0.425 |
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