ABS50954.1 protein (Campylobacter hominis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABS50954.1

Leukotoxin translocation ATP-binding protein LktB; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01846. (699 aa)

Predicted Functional Partners:

ABS51918.1

0.992

ABS51778.1

0.820

ABS51432.1

0.808

ABS52227.1

0.808

ABS51862.1

0.805

ABS51985.1

0.804

ABS51139.1

0.804

ABS52131.1

0.804

ABS51285.1

0.803

ABS51618.1

0.800

Your Current Organism:

Campylobacter hominis

NCBI taxonomy Id: 360107
Other names: C. hominis ATCC BAA-381, Campylobacter hominis ATCC BAA-381, Campylobacter hominis str. ATCC BAA-381, Campylobacter hominis strain ATCC BAA-381

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABS50954.1	ABS51139.1	CHAB381_1446	CHAB381_0597	Leukotoxin translocation ATP-binding protein LktB; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01846.	ApxIVA Var3.	0.804
ABS50954.1	ABS51285.1	CHAB381_1446	CHAB381_1191	Leukotoxin translocation ATP-binding protein LktB; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01846.	ApxIVA Var3.	0.803
ABS50954.1	ABS51432.1	CHAB381_1446	CHAB381_1186	Leukotoxin translocation ATP-binding protein LktB; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01846.	Type I secretion target ggxgxdxxx repeat (2 copies) domain protein; Identified by match to protein family HMM PF00353.	0.808
ABS50954.1	ABS51618.1	CHAB381_1446	CHAB381_1433	Leukotoxin translocation ATP-binding protein LktB; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01846.	Conserved hypothetical protein.	0.800
ABS50954.1	ABS51778.1	CHAB381_1446	CHAB381_1441	Leukotoxin translocation ATP-binding protein LktB; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01846.	Ig family protein; Identified by match to protein family HMM PF00353; match to protein family HMM PF06594.	0.820
ABS50954.1	ABS51862.1	CHAB381_1446	CHAB381_1438	Leukotoxin translocation ATP-binding protein LktB; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01846.	Type I secretion target ggxgxdxxx repeat (2 copies) domain protein; Identified by match to protein family HMM PF00353.	0.805
ABS50954.1	ABS51918.1	CHAB381_1446	CHAB381_1445	Leukotoxin translocation ATP-binding protein LktB; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01846.	Putative membrane-fusion protein; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.	0.992
ABS50954.1	ABS51985.1	CHAB381_1446	CHAB381_0594	Leukotoxin translocation ATP-binding protein LktB; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01846.	Contains 2 copies of ggxgxdxxx repeat; identified by match to protein family HMM PF00353.	0.804
ABS50954.1	ABS52131.1	CHAB381_1446	CHAB381_1199	Leukotoxin translocation ATP-binding protein LktB; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01846.	Hemolysin-type calcium binding protein; Identified by match to protein family HMM PF00353.	0.804
ABS50954.1	ABS52227.1	CHAB381_1446	CHAB381_1194	Leukotoxin translocation ATP-binding protein LktB; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01846.	Type I secretion target ggxgxdxxx repeat (2 copies) domain protein; Identified by match to protein family HMM PF00353.	0.808
ABS51139.1	ABS50954.1	CHAB381_0597	CHAB381_1446	ApxIVA Var3.	Leukotoxin translocation ATP-binding protein LktB; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01846.	0.804
ABS51139.1	ABS51778.1	CHAB381_0597	CHAB381_1441	ApxIVA Var3.	Ig family protein; Identified by match to protein family HMM PF00353; match to protein family HMM PF06594.	0.766
ABS51139.1	ABS51918.1	CHAB381_0597	CHAB381_1445	ApxIVA Var3.	Putative membrane-fusion protein; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.	0.746
ABS51139.1	ABS51985.1	CHAB381_0597	CHAB381_0594	ApxIVA Var3.	Contains 2 copies of ggxgxdxxx repeat; identified by match to protein family HMM PF00353.	0.403
ABS51285.1	ABS50954.1	CHAB381_1191	CHAB381_1446	ApxIVA Var3.	Leukotoxin translocation ATP-binding protein LktB; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01846.	0.803
ABS51285.1	ABS51778.1	CHAB381_1191	CHAB381_1441	ApxIVA Var3.	Ig family protein; Identified by match to protein family HMM PF00353; match to protein family HMM PF06594.	0.870
ABS51285.1	ABS51918.1	CHAB381_1191	CHAB381_1445	ApxIVA Var3.	Putative membrane-fusion protein; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.	0.740
ABS51432.1	ABS50954.1	CHAB381_1186	CHAB381_1446	Type I secretion target ggxgxdxxx repeat (2 copies) domain protein; Identified by match to protein family HMM PF00353.	Leukotoxin translocation ATP-binding protein LktB; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01846.	0.808
ABS51432.1	ABS51778.1	CHAB381_1186	CHAB381_1441	Type I secretion target ggxgxdxxx repeat (2 copies) domain protein; Identified by match to protein family HMM PF00353.	Ig family protein; Identified by match to protein family HMM PF00353; match to protein family HMM PF06594.	0.791
ABS51432.1	ABS51918.1	CHAB381_1186	CHAB381_1445	Type I secretion target ggxgxdxxx repeat (2 copies) domain protein; Identified by match to protein family HMM PF00353.	Putative membrane-fusion protein; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.	0.752

page 1 of 3

Server load: low (30%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About