STRINGSTRING
YscC YscC yscT yscT YscJ YscJ SctR SctR yscV yscV nolT nolT yscS yscS LI1161 LI1161 YscL YscL LI1157 LI1157 sctL sctL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YscCPutative type III secretion protein YscC. (583 aa)    
Predicted Functional Partners:
yscT
Type III secretion component protein SctT.
 
 
 0.973
YscJ
Putative type III secretion protein.
 
 
 0.965
SctR
Translocation protein in type III secretion.
 
 
 0.962
yscV
Putative type III secretion pore protein.
 
 
 0.942
nolT
LscJ.
 
 
 0.941
yscS
Probable translocation protein in type III secretion.
 
 
 0.927
LI1161
NA.
  
  
 0.910
YscL
Putative type III secretion protein.
 
  
 0.907
LI1157
Regulatory protein PcrH.
 
    0.863
sctL
Type III secretion protein, YopL family putative type III secretion protein.
 
  
 0.831
Your Current Organism:
Lawsonia intracellularis
NCBI taxonomy Id: 363253
Other names: L. intracellularis PHE/MN1-00, Lawsonia intracellularis PHE/MN1-00, Lawsonia intracellularis str. PHE/MN1-00, Lawsonia intracellularis strain PHE/MN1-00
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