STRINGSTRING
trmB trmB LVIS_1479 LVIS_1479 LVIS_0539 LVIS_0539 truB truB LVIS_1064 LVIS_1064 LVIS_0964 LVIS_0964 LVIS_1480 LVIS_1480 LVIS_1481 LVIS_1481 LVIS_0862 LVIS_0862 LVIS_0924 LVIS_0924 truA truA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmBPredicted S-adenosylmethionine-dependent methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (215 aa)    
Predicted Functional Partners:
LVIS_1479
Choline kinase-like enzyme.
  
  
 0.689
LVIS_0539
N-acetylglucosamine 6-phosphate deacetylase.
      0.673
truB
Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
  
 
 0.654
LVIS_1064
SAM-dependent methyltransferase.
  
 
 0.626
LVIS_0964
tRNA and rRNA cytosine-C5-methylase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
 
 0.619
LVIS_1480
Predicted ABC-type exoprotein transport system, permease component.
       0.607
LVIS_1481
ABC-type multidrug transport system, ATPase component.
       0.607
LVIS_0862
tRNA and rRNA cytosine-C5-methylase.
  
 
 0.602
LVIS_0924
Biotin operon repressor.
     
 0.541
truA
Pseudouridylate synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
 
 0.512
Your Current Organism:
Lactobacillus brevis
NCBI taxonomy Id: 387344
Other names: L. brevis ATCC 367, Lactobacillus brevis ATCC 367, Lactobacillus brevis str. ATCC 367, Lactobacillus brevis strain ATCC 367
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