Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CRP_026 | CRP_046 | CRP_026 | CRP_046 | Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Ribosomal protein S9. | 0.999 |
CRP_026 | CRP_132 | CRP_026 | CRP_132 | Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Ribosomal protein L27. | 0.999 |
CRP_026 | CRP_140 | CRP_026 | CRP_140 | Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Putative ribosomal protein L15. | 0.999 |
CRP_026 | rplT | CRP_026 | CRP_090 | Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (By similarity). | 0.999 |
CRP_026 | rpoA | CRP_026 | CRP_135 | Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.886 |
CRP_026 | rpsB | CRP_026 | CRP_020 | Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
CRP_026 | rpsD | CRP_026 | CRP_136 | Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
CRP_026 | rpsK | CRP_026 | CRP_137 | Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
CRP_026 | rpsM | CRP_026 | CRP_138 | Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
CRP_026 | tuf | CRP_026 | CRP_157 | Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.999 |
CRP_046 | CRP_026 | CRP_046 | CRP_026 | Ribosomal protein S9. | Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | 0.999 |
CRP_046 | CRP_132 | CRP_046 | CRP_132 | Ribosomal protein S9. | Ribosomal protein L27. | 0.999 |
CRP_046 | CRP_140 | CRP_046 | CRP_140 | Ribosomal protein S9. | Putative ribosomal protein L15. | 0.999 |
CRP_046 | rplT | CRP_046 | CRP_090 | Ribosomal protein S9. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (By similarity). | 0.999 |
CRP_046 | rpoA | CRP_046 | CRP_135 | Ribosomal protein S9. | RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.997 |
CRP_046 | rpsB | CRP_046 | CRP_020 | Ribosomal protein S9. | Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
CRP_046 | rpsD | CRP_046 | CRP_136 | Ribosomal protein S9. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
CRP_046 | rpsK | CRP_046 | CRP_137 | Ribosomal protein S9. | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
CRP_046 | rpsM | CRP_046 | CRP_138 | Ribosomal protein S9. | Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
CRP_046 | tuf | CRP_046 | CRP_157 | Ribosomal protein S9. | Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.999 |
page 1 of 6