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rnhB rnhB Sare_1202 Sare_1202 Sare_1200 Sare_1200 Sare_3595 Sare_3595 Sare_0002 Sare_0002 Sare_0479 Sare_0479 coaE coaE Sare_1199 Sare_1199 Sare_1889 Sare_1889 Sare_1753 Sare_1753 polA polA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
rnhBRibonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (269 aa)    
Predicted Functional Partners:
Sare_1202
KEGG: stp:Strop_1313 hypothetical protein.
       0.919
Sare_1200
TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: stp:Strop_1311 signal peptidase I; Belongs to the peptidase S26 family.
 
    0.905
Sare_3595
PFAM: ribonuclease H; Phosphoglycerate mutase; KEGG: stp:Strop_3355 phosphoglycerate mutase.
  
 
 0.903
Sare_0002
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.898
Sare_0479
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; DNA polymerase III beta chain; KEGG: sco:SCO1180 DNA polymerase III beta chain.
  
 
 0.886
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
    0.880
Sare_1199
KEGG: stp:Strop_1310 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; Belongs to the peptidase S26 family.
 
    0.869
Sare_1889
PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: fra:Francci3_1593 AMP-dependent synthetase and ligase.
   
 
 0.847
Sare_1753
KEGG: stp:Strop_1767 hypothetical protein.
    
 
 0.811
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
 
 0.739
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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