STRINGSTRING
Sare_2607 Sare_2607 Sare_2608 Sare_2608 Sare_5088 Sare_5088 Sare_0417 Sare_0417 Sare_1834 Sare_1834
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2607PFAM: NUDIX hydrolase; KEGG: stp:Strop_2445 NUDIX hydrolase; Belongs to the Nudix hydrolase family. (157 aa)    
Predicted Functional Partners:
Sare_2608
KEGG: stp:Strop_4341 hypothetical protein.
 
     0.481
Sare_5088
KEGG: stp:Strop_4571 hypothetical protein.
  
     0.471
Sare_0417
PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_0347 major facilitator superfamily MFS_1.
  
     0.418
Sare_1834
TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: sco:SCP1.273c putative large secreted protein.
  
     0.404
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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