STRINGSTRING
Swit_2667 Swit_2667 Swit_2666 Swit_2666 Swit_2665 Swit_2665 Swit_0237 Swit_0237 Swit_1458 Swit_1458 Swit_4519 Swit_4519 asd asd Swit_0514 Swit_0514 Swit_3144 Swit_3144 Swit_2416 Swit_2416 metXA metXA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2667PFAM: peptidase M2, peptidyl-dipeptidase A. (620 aa)    
Predicted Functional Partners:
Swit_2666
PFAM: alpha/beta hydrolase fold.
  
  
 0.763
Swit_2665
PFAM: glutathione-dependent formaldehyde-activating, GFA.
       0.746
Swit_0237
PFAM: peptidase M20; peptidase M28.
 
   
 0.654
Swit_1458
PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM.
   
   0.542
Swit_4519
Methyltransferase-like protein.
  
     0.533
asd
Aspartate semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
     
 0.526
Swit_0514
Endothelin-converting enzyme 1; PFAM: peptidase M13, neprilysin; peptidase M13.
  
   
 0.516
Swit_3144
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
     0.514
Swit_2416
PFAM: amidohydrolase; Amidohydrolase 3.
 
    0.512
metXA
Homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine.
  
    0.491
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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