STRINGSTRING
rlmF rlmF Swoo_4825 Swoo_4825 Swoo_4823 Swoo_4823 Swoo_3056 Swoo_3056 Swoo_3042 Swoo_3042 Swoo_2372 Swoo_2372 purL purL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlmFProtein of unknown function DUF890; Specifically methylates the adenine in position 1618 of 23S rRNA. (382 aa)    
Predicted Functional Partners:
Swoo_4825
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
       0.500
Swoo_4823
PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_03985 histone acetyltransferase HPA2/related acetyltransferase.
       0.481
Swoo_3056
PFAM: protein of unknown function DUF45; KEGG: spl:Spea_2626 protein of unknown function DUF45.
 
     0.478
Swoo_3042
KEGG: sse:Ssed_1610 hypothetical protein.
 
     0.473
Swoo_2372
KEGG: sse:Ssed_2116 hypothetical protein.
 
     0.438
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
      
 0.406
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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