node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Msil_0223 | pnp | Msil_0223 | Msil_0268 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: xau:Xaut_1589 DEAD/DEAH box helicase domain-containing protein; Belongs to the DEAD box helicase family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.855 |
Msil_0223 | rne | Msil_0223 | Msil_0729 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: xau:Xaut_1589 DEAD/DEAH box helicase domain-containing protein; Belongs to the DEAD box helicase family. | Ribonuclease, Rne/Rng family; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. | 0.596 |
Msil_0223 | rplC | Msil_0223 | Msil_0580 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: xau:Xaut_1589 DEAD/DEAH box helicase domain-containing protein; Belongs to the DEAD box helicase family. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.803 |
Msil_0223 | rplD | Msil_0223 | Msil_0579 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: xau:Xaut_1589 DEAD/DEAH box helicase domain-containing protein; Belongs to the DEAD box helicase family. | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.780 |
Msil_0223 | rpoA | Msil_0223 | Msil_2991 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: xau:Xaut_1589 DEAD/DEAH box helicase domain-containing protein; Belongs to the DEAD box helicase family. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.521 |
Msil_0223 | rpoB | Msil_0223 | Msil_3868 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: xau:Xaut_1589 DEAD/DEAH box helicase domain-containing protein; Belongs to the DEAD box helicase family. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.471 |
Msil_0223 | rpsD | Msil_0223 | Msil_0105 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: xau:Xaut_1589 DEAD/DEAH box helicase domain-containing protein; Belongs to the DEAD box helicase family. | RNA-binding S4 domain protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.803 |
Msil_0808 | pnp | Msil_0808 | Msil_0268 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bid:Bind_1778 DEAD/DEAH box helicase domain protein. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.855 |
Msil_0808 | rne | Msil_0808 | Msil_0729 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bid:Bind_1778 DEAD/DEAH box helicase domain protein. | Ribonuclease, Rne/Rng family; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. | 0.596 |
Msil_0808 | rplC | Msil_0808 | Msil_0580 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bid:Bind_1778 DEAD/DEAH box helicase domain protein. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.803 |
Msil_0808 | rplD | Msil_0808 | Msil_0579 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bid:Bind_1778 DEAD/DEAH box helicase domain protein. | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.780 |
Msil_0808 | rpoA | Msil_0808 | Msil_2991 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bid:Bind_1778 DEAD/DEAH box helicase domain protein. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.521 |
Msil_0808 | rpoB | Msil_0808 | Msil_3868 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bid:Bind_1778 DEAD/DEAH box helicase domain protein. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.471 |
Msil_0808 | rpsD | Msil_0808 | Msil_0105 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bid:Bind_1778 DEAD/DEAH box helicase domain protein. | RNA-binding S4 domain protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.803 |
nusA | pnp | Msil_2297 | Msil_0268 | NusA antitermination factor; Participates in both transcription termination and antitermination. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.908 |
nusA | rho | Msil_2297 | Msil_2532 | NusA antitermination factor; Participates in both transcription termination and antitermination. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.919 |
nusA | rplC | Msil_2297 | Msil_0580 | NusA antitermination factor; Participates in both transcription termination and antitermination. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.969 |
nusA | rplD | Msil_2297 | Msil_0579 | NusA antitermination factor; Participates in both transcription termination and antitermination. | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.941 |
nusA | rpoA | Msil_2297 | Msil_2991 | NusA antitermination factor; Participates in both transcription termination and antitermination. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.995 |
nusA | rpoB | Msil_2297 | Msil_3868 | NusA antitermination factor; Participates in both transcription termination and antitermination. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.994 |