STRINGSTRING
cbbL cbbL TK90_0859 TK90_0859 TK90_2566 TK90_2566 TK90_0860 TK90_0860 TK90_0861 TK90_0861 TK90_0866 TK90_0866 tatA tatA dnaA dnaA gph gph pgk pgk TK90_1192 TK90_1192
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbbLRibulose-bisphosphate carboxylase; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. (473 aa)    
Predicted Functional Partners:
TK90_0859
PFAM: ribulose bisphosphate carboxylase small chain; KEGG: hna:Hneap_0921 ribulose-bisphosphate carboxylase.
 
 0.999
TK90_2566
PFAM: phosphoribulokinase/uridine kinase; KEGG: hna:Hneap_0561 phosphoribulokinase.
 
 
 0.982
TK90_0860
KEGG: nha:Nham_4334 carboxysome shell protein CsoS2.
     
 0.977
TK90_0861
TIGRFAM: carboxysome shell carbonic anhydrase; PFAM: Carboxysome shell carbonic anhydrase; KEGG: afe:Lferr_1386 carboxysome shell carbonic anhydrase.
 
   
 0.976
TK90_0866
PFAM: microcompartments protein; SMART: microcompartments protein; KEGG: nwi:Nwi_1980 carboxysome structural peptide CsoS1B.
     
 0.965
tatA
Twin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
      
 0.957
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
      
 0.954
gph
Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
    
 0.918
pgk
PFAM: phosphoglycerate kinase; KEGG: ilo:IL2212 phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.911
TK90_1192
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: azo:azo1615 hydrolase.
     
 0.905
Your Current Organism:
Thioalkalivibrio sp. K90mix
NCBI taxonomy Id: 396595
Other names: T. sp. K90mix
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.