STRINGSTRING
liaR liaR liaS liaS liaF liaF yhcZ yhcZ degS degS ADC51609.1 ADC51609.1 desK desK liaG liaG ADC50668.1 ADC50668.1 ADC49569.1 ADC49569.1 ADC50128.1 ADC50128.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
liaRCOG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. (214 aa)    
Predicted Functional Partners:
liaS
LiaS two-component cell wall antibiotic sensor histidine kinase; COG0642 Signal transduction histidine kinase.
 0.999
liaF
Lia protein that negatively regulates LiaR-dependent transcriptional effects; COG4758 Predicted membrane protein.
 
  
 0.964
yhcZ
Two-component sensor histidine kinase (YhcZ); COG2203 FOG: GAF domain.
 
 
 0.880
degS
Two-component sensor histidine kinase involved in degradative enzyme; Member of the two-component regulatory system DegS/DegU, which plays an important role in the transition growth phase.
 
 
 0.849
ADC51609.1
Two component histidine protein kinase; COG4585 Signal transduction histidine kinase.
 
 
 0.846
desK
COG4585 Signal transduction histidine kinase.
 
 
 0.837
liaG
Lia protein of unknown function.
  
    0.673
ADC50668.1
Multi-sensor hybrid histidine kinase; COG2203 FOG: GAF domain.
 
 
 0.630
ADC49569.1
Diguanylate cyclase/phosphodiesterase with GAF sensor; COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
  
 
 0.573
ADC50128.1
COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain.
  
 
 0.543
Your Current Organism:
Bacillus pseudofirmus
NCBI taxonomy Id: 398511
Other names: B. pseudofirmus OF4, Bacillus pseudofirmus OF4, Bacillus pseudofirmus str. OF4, Bacillus pseudofirmus strain OF4
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