STRINGSTRING
rps6e rps6e rpl13e rpl13e rpl35ae rpl35ae rpl44e rpl44e rpl10e rpl10e rpl40e rpl40e Smar_0724 Smar_0724 rpl21e rpl21e rpl30e rpl30e rps12 rps12 rps7 rps7
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps6ePFAM: ribosomal protein S6e; KEGG: sso:SSO0411 30S ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family. (216 aa)    
Predicted Functional Partners:
rpl13e
KEGG: ape:APES024 50S ribosomal protein L13e; Belongs to the eukaryotic ribosomal protein eL13 family.
   
 
 0.999
rpl35ae
KEGG: ape:APE2324 50S ribosomal protein L35Ae; Belongs to the eukaryotic ribosomal protein eL33 family.
   
 
 0.999
rpl44e
LSU ribosomal protein L44E; Binds to the 23S rRNA.
   
 
 0.999
rpl10e
TIGRFAM: ribosomal protein L10.e; PFAM: Ribosomal protein L10E; KEGG: ape:APE0449 50S ribosomal protein L10e; Belongs to the universal ribosomal protein uL16 family.
  
 
 0.999
rpl40e
PFAM: Ribosomal protein L40e; KEGG: ape:APES002 50S ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
   
 0.999
Smar_0724
SMART: Nucleotide binding protein, PINc; KEGG: sto:ST2137 hypothetical protein.
  
 
 0.999
rpl21e
PFAM: ribosomal protein L21e; KEGG: sto:ST0459 50S ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.
  
 
 0.999
rpl30e
PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: pho:PHS043 50S ribosomal protein L30e; Belongs to the eukaryotic ribosomal protein eL30 family.
   
 
 0.999
rps12
SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.
   
 0.999
rps7
SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family.
   
 0.999
Your Current Organism:
Staphylothermus marinus
NCBI taxonomy Id: 399550
Other names: S. marinus F1, Staphylothermus marinus ATCC 43588, Staphylothermus marinus DSM 3639, Staphylothermus marinus F1, Staphylothermus marinus JCM 9404, Staphylothermus marinus str. F1, Staphylothermus marinus strain F1
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