Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Pmen_1301 | rlmM | Pmen_1301 | Pmen_1904 | TIGRFAM: carboxylate/amino acid/amine transporter; PFAM: protein of unknown function DUF6, transmembrane. | SAM-dependent methyltransferase-like protein; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily. | 0.468 |
| Pmen_1903 | rlmM | Pmen_1903 | Pmen_1904 | Aconitase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | SAM-dependent methyltransferase-like protein; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily. | 0.520 |
| Pmen_3549 | rlmM | Pmen_3549 | Pmen_1904 | PFAM: 37kDa nucleoid-associated protein. | SAM-dependent methyltransferase-like protein; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily. | 0.418 |
| Pmen_4169 | rlmM | Pmen_4169 | Pmen_1904 | PFAM: protein of unknown function DUF423. | SAM-dependent methyltransferase-like protein; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily. | 0.671 |
| queF | rlmM | Pmen_1923 | Pmen_1904 | GTP cyclohydrolase I; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). | SAM-dependent methyltransferase-like protein; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily. | 0.427 |
| rlmM | Pmen_1301 | Pmen_1904 | Pmen_1301 | SAM-dependent methyltransferase-like protein; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily. | TIGRFAM: carboxylate/amino acid/amine transporter; PFAM: protein of unknown function DUF6, transmembrane. | 0.468 |
| rlmM | Pmen_1903 | Pmen_1904 | Pmen_1903 | SAM-dependent methyltransferase-like protein; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily. | Aconitase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | 0.520 |
| rlmM | Pmen_3549 | Pmen_1904 | Pmen_3549 | SAM-dependent methyltransferase-like protein; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily. | PFAM: 37kDa nucleoid-associated protein. | 0.418 |
| rlmM | Pmen_4169 | Pmen_1904 | Pmen_4169 | SAM-dependent methyltransferase-like protein; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily. | PFAM: protein of unknown function DUF423. | 0.671 |
| rlmM | queF | Pmen_1904 | Pmen_1923 | SAM-dependent methyltransferase-like protein; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily. | GTP cyclohydrolase I; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). | 0.427 |
| rlmM | tusA | Pmen_1904 | Pmen_1905 | SAM-dependent methyltransferase-like protein; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily. | SirA family protein; Sulfur carrier protein which probably makes part of a sulfur- relay system; Belongs to the sulfur carrier protein TusA family. | 0.502 |
| tusA | rlmM | Pmen_1905 | Pmen_1904 | SirA family protein; Sulfur carrier protein which probably makes part of a sulfur- relay system; Belongs to the sulfur carrier protein TusA family. | SAM-dependent methyltransferase-like protein; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily. | 0.502 |