Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BDU_301 | divIB | BDU_301 | BDU_304 | Uncharacterized conserved protein; Probable lipoprotein (SpLip). | Cell division protein. | 0.775 |
BDU_301 | fliN | BDU_301 | BDU_280 | Uncharacterized conserved protein; Probable lipoprotein (SpLip). | Flagellar motor switch protein; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family. | 0.449 |
BDU_301 | ftsA | BDU_301 | BDU_303 | Uncharacterized conserved protein; Probable lipoprotein (SpLip). | Cell division protein; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family. | 0.785 |
BDU_301 | ftsW | BDU_301 | BDU_305 | Uncharacterized conserved protein; Probable lipoprotein (SpLip). | Cell division protein; Belongs to the SEDS family. | 0.704 |
BDU_301 | ftsZ | BDU_301 | BDU_302 | Uncharacterized conserved protein; Probable lipoprotein (SpLip). | Cell division protein; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.818 |
BDU_301 | hslU | BDU_301 | BDU_298 | Uncharacterized conserved protein; Probable lipoprotein (SpLip). | Heat shock protein; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. | 0.805 |
BDU_301 | murF | BDU_301 | BDU_307 | Uncharacterized conserved protein; Probable lipoprotein (SpLip). | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein. | 0.635 |
BDU_301 | smf | BDU_301 | BDU_300 | Uncharacterized conserved protein; Probable lipoprotein (SpLip). | Smf protein. | 0.825 |
divIB | BDU_301 | BDU_304 | BDU_301 | Cell division protein. | Uncharacterized conserved protein; Probable lipoprotein (SpLip). | 0.775 |
divIB | fliN | BDU_304 | BDU_280 | Cell division protein. | Flagellar motor switch protein; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family. | 0.645 |
divIB | ftsA | BDU_304 | BDU_303 | Cell division protein. | Cell division protein; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family. | 0.993 |
divIB | ftsW | BDU_304 | BDU_305 | Cell division protein. | Cell division protein; Belongs to the SEDS family. | 0.956 |
divIB | ftsZ | BDU_304 | BDU_302 | Cell division protein. | Cell division protein; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.910 |
divIB | hslU | BDU_304 | BDU_298 | Cell division protein. | Heat shock protein; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. | 0.763 |
divIB | mreB-1 | BDU_304 | BDU_718 | Cell division protein. | Rod shape-determining protein. | 0.416 |
divIB | murF | BDU_304 | BDU_307 | Cell division protein. | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein. | 0.910 |
divIB | murG | BDU_304 | BDU_771 | Cell division protein. | UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide); Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.950 |
divIB | smf | BDU_304 | BDU_300 | Cell division protein. | Smf protein. | 0.775 |
fliN | BDU_301 | BDU_280 | BDU_301 | Flagellar motor switch protein; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family. | Uncharacterized conserved protein; Probable lipoprotein (SpLip). | 0.449 |
fliN | divIB | BDU_280 | BDU_304 | Flagellar motor switch protein; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family. | Cell division protein. | 0.645 |
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